Browse Element(s) Details


Os.24140.1.A1_at

Description gb:CA761287
DB_XREF= gi:25805326
DB_XREF=BR060004A20D09.ab1
CLONE=BR060004A20D09.ab1
TID=Os.24140.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24140 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g177001/11NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g17680Os.8589.1.S1_at11/112+10181424..10189199ethylene-responsive family protein, putative, expressed
LOC_Os02g17680Os.22508.2.S1_x_at1/112+10181424..10189199ethylene-responsive family protein, putative, expressed
LOC_Os02g17690OsAffx.2656.1.S1_at10/112+10197327..10199936hypothetical protein
LOC_Os02g17700Os.49441.1.S1_at11/112+10207345..10212944NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os02g17700Os.24140.1.A1_at1/112+10207345..10212944NADPH:adrenodoxin oxidoreductase, mitochondrial precursor, putative, expressed
LOC_Os02g17710Os.26907.1.S1_at11/112+10213161..10216348Leucine Rich Repeat family protein, expressed
LOC_Os02g17710Os.33851.3.A1_x_at1/112+10213161..10216348Leucine Rich Repeat family protein, expressed
LOC_Os02g17714NANA2+10226796..10228777hypothetical protein
LOC_Os02g17720Os.45957.4.S1_x_at1/112+10230581..10235374retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0009055molecular_functionelectron carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24140.1.A1_at--800--5631Chr06:7703300..7703324 (25 bp)
GACAGGAACTGAATTTTTGCGGAAC
NONE
Os.24140.1.A1_at--744--7151Chr06:7703333..7703357 (25 bp)
GTCTATTTGGTTCCTTTGTCTTATA
NONE
Os.24140.1.A1_at--155--6951Chr06:7703436..7703460 (25 bp)
GTAGTATATTTTCGAGCCTATGCTT
NONE
Os.24140.1.A1_at--583--8831NONE
TGATTAATCGTCTTGATCGGTCCCC
NONE
Os.24140.1.A1_at--957--9431NONE
TCGGTCCCCTGACTCTGATCAAGGA
NONE
Os.24140.1.A1_at--720--191Chr06:7703578..7703602 (25 bp)
ATTTGATCGTCCGATTAATCGTCGA
NONE
Os.24140.1.A1_at--932--9751Chr06:7703614..7703638 (25 bp)
TAATCGTCCGATCAAAGCACCTATC
NONE
Os.24140.1.A1_at--841--1472Chr06:7703629..7703653 (25 bp)
AGCACCTATCGATCACTTTTAGAAC
NONE
Os.24140.1.A1_at--886--10111Chr06:7703680..7703704 (25 bp)
TATGTGTTACTACTGCTGGTTGCTT
NONE
Os.24140.1.A1_at--288--1991Chr06:7703691..7703715 (25 bp)
ACTGCTGGTTGCTTTACACTATGAT
NONE
Os.24140.1.A1_at--470--6591NONE
GATTGCTTTATCCTATGCGCTATAT
NONE
Target Sequence 
GACAGGAACTGAATTTTTGCGGAACGTAGTAGGGTCTATTTGGTTCCTTTGTCTTATAAGCTACAGCTAAATATTAAATT
TGAAAAAATTAGGATTTTTATCCAATTTTAGAACTAAATTTTAGAGTTTTTACGTTGTAGTATATTTTCGAGCCTATGCT
TTTAAACAGCAAATACCACATATTAGTGGTATCTGATCTTTCGATTAATTGTGATTAATCGTCTTGATCGGTCCCCTGAC
TCTGATCAAGGACATTCATTTGATCAACTCGATCAGAAATTTGATCGTCCGATTAATCGTCGATCAGACGCGATTAATCG
TCCGATCAAAGCACCTATCGATCACTTTTAGAACAAGTCTTAAGGTTTAGCACATGTGAATATGTGTTACTACTGCTGGT
TGCTTTACACTATGATTGCTTTATCCTATGCGCTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24140.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis