Browse Element(s) Details


Os.24150.1.A1_at

Description gb:CA761304
DB_XREF= gi:25805343
DB_XREF=BR060004B10B07.ab1
CLONE=BR060004B10B07.ab1
TID=Os.24150.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24150 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g243201/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g24290OsAffx.23366.1.S1_at1/118+14526433..14529102transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24290OsAffx.23366.2.S1_s_at1/118+14526433..14529102transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24300NANA8+14530555..14531231expressed protein
LOC_Os08g24310Os.54153.1.S1_at11/118+14540212..14546578Leucine Rich Repeat family protein, expressed
LOC_Os08g24320OsAffx.4814.1.S1_at1/118+14549639..14553626retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24320Os.24150.1.A1_at1/118+14549639..14553626retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g24330Os.52481.1.S1_at11/118+14554412..14557984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24330OsAffx.9230.1.S1_x_at6/118+14554412..14557984transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g24340NANA8+14563219..14564014hypothetical protein
LOC_Os08g24350OsAffx.17125.1.S1_at11/118+14565592..14566607hypothetical protein
LOC_Os08g24350OsAffx.2524.2.S1_at2/118+14565592..14566607hypothetical protein
LOC_Os08g24360OsAffx.29328.1.S1_at9/118+14569922..14572334hypothetical protein
LOC_Os08g24370OsAffx.17126.1.S1_at11/118+14575515..14577065F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24150.1.A1_at--117--71NONE
ATTCAGTAGAATCAACCCACCCATA
NONE
Os.24150.1.A1_at--690--2611NONE
AACCCACCCATAGAAGCTGCAGTAG
NONE
Os.24150.1.A1_at--1028--2631NONE
AACCATATATTTTCTCAACCCCTGA
NONE
Os.24150.1.A1_at--768--6131NONE
GAGGGTATTCGTGGTGTTTTCTATC
NONE
Os.24150.1.A1_at--993--5291NONE
GAAGGAACTCCCGTTATGGATGACA
NONE
Os.24150.1.A1_at--278--5311NONE
GAAGGACTTTTCGATGATGCTGAGA
NONE
Os.24150.1.A1_at--1025--6951NONE
GTAGCAGCCCTTGTGAATTTTCTTG
NONE
Os.24150.1.A1_at--944--10551NONE
TTCTTGTGTGCCATATATGTGCTGA
NONE
Os.24150.1.A1_at--492--10211NONE
TATTTTGCTGAAATCGCTCGAGGCT
NONE
Os.24150.1.A1_at--261--4814Chr10:4698076..4698100 (25 bp)
GCTCGAGGCTTGTCTTGAGCTGTAT
NONE
Os.24150.1.A1_at--67--3031NONE
AATGCGATGTTTTTGCTATGCTACT
NONE
Target Sequence 
ATTCAGTAGAATCAACCCACCCATAGAAGCTGCAGTAGAAAAAGAGGAGTTCAACCATATATTTTCTCAACCCCTGAATT
AGCAACAAAGAGAAGTTCGAGTTCCCGAGGAATCATTCATTTTGACTGAATTTGAGGGTATTCGTGGTGTTTTCTATCCA
GATGTTGAATCCTTAGAATCTGTTGAACAAGAATATATGGCTGGAAGTGAAGGAACTCCCGTTATGGATGACAACCAGGA
AGGACTTTTCGATGATGCTGAGATTGGCTATGATAATTAGTATATAATATGCATGGTTTATATAGTTGCCGTAGTGGTGA
TGGTAGTAACTGTGGCAACGGTAGTATTTGTAGTAGTAGCAGTAACCTTAATTTGAGTAGTAGTAATATCTGTAGCAGCC
CTTGTGAATTTTCTTGTGTGCCATATATGTGCTGAGTTTTTGGGGTTTGTATATTATTTTGCTGAAATCGCTCGAGGCTT
GTCTTGAGCTGTATCTATGGTACTGTAATAACCGGAACCAATGCGATGTTTTTGCTATGCTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24150.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis