Browse Element(s) Details


Os.24154.1.A1_at

Description gb:AK120973.1
DB_XREF= gi:37990596
TID=Os.24154.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.24154 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023041H23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023041H23, full insert sequence.
FL= gb:AK120973.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0264011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g02600Os.25109.1.S1_at11/1111+820017..821956expressed protein
LOC_Os11g02610Os.12110.1.S1_at11/1111+822425..824753RPT2, putative, expressed
LOC_Os11g02620Os.56849.1.S1_at1/1111+826667..830791transposon protein, putative, Mutator sub-class, expressed
LOC_Os11g02630Os.50540.1.S1_at11/1111+836813..838842expressed protein
LOC_Os11g02630Os.17196.1.A1_s_at11/1111+836813..838842expressed protein
LOC_Os11g02640Os.24154.1.A1_at11/1111+844216..847344expressed protein
LOC_Os11g02650OsAffx.24949.3.S1_x_at1/1111+849435..850267fringe protein, putative
LOC_Os11g02650OsAffx.24949.1.S1_x_at1/1111+849435..850267fringe protein, putative
LOC_Os11g02660Os.26742.1.S1_at11/1111+850566..854102hydrolase, alpha/beta fold family protein, expressed
LOC_Os11g02670Os.10542.1.S1_s_at11/1111+855479..859981Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g02670Os.51389.1.S1_at11/1111+855479..859981Zinc finger, C3HC4 type family protein, expressed
LOC_Os11g02680NANA11+864498..864962retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g02690OsAffx.18640.1.S1_at11/1111+866517..867556hypothetical protein
LOC_Os11g02690OsAffx.29326.1.S1_at1/1111+866517..867556hypothetical protein
LOC_Os11g02700NANA11+870808..874513retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24154.1.A1_at--644--6491Chr11:844743..844767 (25 bp)
GATAGCAATCACACTTACTCAGAAG
LOC_Os11g02640
Os.24154.1.A1_at--504--271Chr11:844718..844742 (25 bp)
ATATGTTTCCTGTAGTTGAGGCTTA
LOC_Os11g02640
Os.24154.1.A1_at--64--511Chr11:844688..844712 (25 bp)
ATCGTGAAGAACTATCTCCTGTCCC
LOC_Os11g02640
Os.24154.1.A1_at--1006--3052Chr12:884497..884521 (25 bp)
AATCTCCAATCCTCAGCTCATGTGA
NONE
Os.24154.1.A1_at--44--2732Chr12:884442..884466 (25 bp)
AAGCAGTGCTGCCAATTTACCAAGC
NONE
Os.24154.1.A1_at--101--3012Chr12:884402..884426 (25 bp)
AATGCATTGGTACCTGACACAGATT
NONE
Os.24154.1.A1_at--260--1851Chr11:844533..844557 (25 bp)
ACGCATGTTATTTGTTGTCCTCTCT
LOC_Os11g02640
Os.24154.1.A1_at--675--31Chr11:844499..844523 (25 bp)
ATTGGTTTGATTGTGACTGCTGTGC
LOC_Os11g02640
Os.24154.1.A1_at--1108--1971Chr11:844484..844508 (25 bp)
ACTGCTGTGCATATTGTTTTTGTCC
LOC_Os11g02640
Os.24154.1.A1_at--818--6812Chr12:884312..884335 (24 bp)
GTTTTTGTCCATTCTTTATCCACAT
NONE
Os.24154.1.A1_at--573--10051Chr11:844327..844351 (25 bp)
TAGGGTTTGAGTTCCATGTTGGGTT
LOC_Os11g02640
Target Sequence 
GATAGCAATCACACTTACTCAGAAGATATGTTTCCTGTAGTTGAGGCTTATTTAGATCGTGAAGAACTATCTCCTGTCCC
CTCAAGGCCTGAATCTCCAATCCTCAGCTCATGTGAGTCATCATCCCCCAAATCNAGCAATTCTAAAAGCAGTGCTGCCA
ATTTACCAAGCAATGTNTCAGCCAAATGCATTGGTACCTGACACAGATTGACGCATGTTATTTGTTGTCCTCTCTGGGTC
TGGAATTGGTTTGATTGTGACTGCTGTGCATATTGTTTTTGTCCATTCTTTATCCACATTGGTTTGCAAATGTAATTTAA
TTATAGGTTTCTGGTTTTGTGTATGGTTTGGGTTCNGTCTAGGTTTGGTGAAATTGACCGGTGTGAATACATAGATAAAG
TTTACAATTCTCAGTATAGGGTTTGAGTTCCATGTTGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24154.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis