Browse Element(s) Details


Os.2422.1.S1_a_at

Description gb:AK066475.1
DB_XREF= gi:32976493
TID=Os.2422.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2422 (NCBI UniGene Cluster)
UG_TITLE=Putative tyrosine phosphatase mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013068C23, full insert sequence.
FL= gb:AK066475.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0754011/11SHOOT1 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07500OsAffx.16136.1.S1_at11/117+3731691..3733640hypothetical protein
LOC_Os07g07510OsAffx.28326.1.S1_at11/117+3735390..3736105hypothetical protein
LOC_Os07g07520Os.54574.1.S1_at11/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520OsAffx.28452.1.S1_x_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07520Os.57365.1.S1_at1/117+3743653..3748260F-box domain containing protein, expressed
LOC_Os07g07530Os.54674.1.S1_at11/117+3752692..3756154expressed protein
LOC_Os07g07530Os.29072.1.S1_at3/117+3752692..3756154expressed protein
LOC_Os07g07540Os.2422.1.S1_a_at11/117+3758223..3760268SHOOT1 protein, putative, expressed
LOC_Os07g07550OsAffx.28327.1.S1_at11/117+3760941..3764699galactose-1-phosphate uridyl transferase, putative, expressed
LOC_Os07g07550OsAffx.28327.1.S1_x_at11/117+3760941..3764699galactose-1-phosphate uridyl transferase, putative, expressed
LOC_Os07g07560Os.20555.1.S1_at11/117+3771600..3778097protein kinase family protein, putative, expressed
LOC_Os07g07570OsAffx.5243.1.S1_at11/117+3784891..3785235hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2422.1.S1_a_at--689--6451Chr07:3759542..3759566 (25 bp)
GATCAATGAGTCTTCCATAGCTAGC
LOC_Os07g07540
Os.2422.1.S1_a_at--598--2231Chr07:3759568..3759592 (25 bp)
ACAATGTTGCCTGCTGTTACTCGAA
LOC_Os07g07540
Os.2422.1.S1_a_at--494--6771Chr07:3759583..3759685 (25 bp)
GTTACTCGAAGCTTGACCGGATACA
LOC_Os07g07540
Os.2422.1.S1_a_at--747--9851Chr07:3759682..3759706 (25 bp)
TACAAGCTGGTATTTCTGCACTGGA
LOC_Os07g07540
Os.2422.1.S1_a_at--781--5011Chr07:3759827..3759851 (25 bp)
GCACCGACCCGGATCTAGAAAACTT
LOC_Os07g07540
Os.2422.1.S1_a_at--769--8211Chr07:3759864..3759888 (25 bp)
GGAATTCAACGTCCTGCTGAACAAG
LOC_Os07g07540
Os.2422.1.S1_a_at--403--3251Chr07:3759921..3759945 (25 bp)
CAACGCCATCAAATCCTTGTTTGGA
LOC_Os07g07540
Os.2422.1.S1_a_at--677--2471Chr07:3760017..3760041 (25 bp)
AACACTTCTGAAGCTTTGCTAGGCT
LOC_Os07g07540
Os.2422.1.S1_a_at--402--291Chr07:3760044..3760068 (25 bp)
ATAGCACTTGGCAAACACGGTTCAA
LOC_Os07g07540
Os.2422.1.S1_a_at--466--3131Chr07:3760067..3760091 (25 bp)
AATTTTTCTCCCTGCCATTAGTTCA
LOC_Os07g07540
Os.2422.1.S1_a_at--663--10591Chr07:3760131..3760155 (25 bp)
TTCTGCAGAACGGTTTCAGTCTTCC
LOC_Os07g07540
Target Sequence 
GATCAATGAGTCTTCCATAGCTAGCTACAATGTTGCCTGCTGTTACTCGAAGCTTGACCGGATACAAGCTGGTATTTCTG
CACTGGAAGATGCCCTGAAAGCAGGTTATGAAGACTTCAAGAGAATTCGCACCGACCCGGATCTAGAAAACTTGAGGAAA
ACTGAGGAATTCAACGTCCTGCTGAACAAGTACGACGAATCGTTCATCAATGAGAATGCTATCAACGCCATCAAATCCTT
GTTTGGATTCAACAAGAAATGAGCACTGAACTGGTCATGGTGGTAGGAGATATTGCATCTTTTCTCCAGCTGCAGTTGAA
CACTTCTGAAGCTTTGCTAGGCTATATAGCACTTGGCAAACACGGTTCAATTTTTCTCCCTGCCATTAGTTCACACTTCA
CACACCAGTAGTTTTAGCTATTCTTGGTGAGATTCTGCAGAACGGTTTCAGTCTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2422.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis