Browse Element(s) Details


Os.24268.2.S1_at

Description gb:AK101314.1
DB_XREF= gi:32986523
TID=Os.24268.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033034B16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033034B16, full insert sequence.
FL= gb:AK101314.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g066807/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g06640Os.47463.1.S1_x_at6/1111+3219183..3225068transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06640Os.14491.2.S1_x_at5/1111+3219183..3225068transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g06650Os.53123.1.S1_at11/1111+3229614..3232441transcription elongation factor, putative, expressed
LOC_Os11g06650Os.52124.1.S1_at1/1111+3229614..3232441transcription elongation factor, putative, expressed
LOC_Os11g06660Os.8626.1.S1_x_at2/1111+3239913..3240191hypothetical protein
LOC_Os11g06660Os.8626.3.S1_x_at1/1111+3239913..3240191hypothetical protein
LOC_Os11g06660Os.8626.1.S1_a_at1/1111+3239913..3240191hypothetical protein
LOC_Os11g06670OsAffx.7023.1.S1_at10/1111+3241728..3245525expressed protein
LOC_Os11g06680Os.24268.1.S1_x_at11/1111+3246004..3250412expressed protein
LOC_Os11g06680Os.24268.2.S1_at7/1111+3246004..3250412expressed protein
LOC_Os11g06690OsAffx.30846.1.S1_at11/1111+3252302..3256841serine esterase family protein, expressed
LOC_Os11g06700OsAffx.30847.2.S1_at11/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06700Os.13941.1.S1_x_at1/1111+3262032..3264110Exo70 exocyst complex subunit family protein, expressed
LOC_Os11g06710OsAffx.18711.1.S1_at9/1111+3265561..3266771hypothetical protein
LOC_Os11g06710OsAffx.24517.1.S1_at2/1111+3265561..3266771hypothetical protein
LOC_Os11g06720Os.12388.1.S1_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.12388.1.S1_x_at11/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.53912.1.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed
LOC_Os11g06720Os.15942.5.S1_x_at1/1111+3274354..3275323ABA/WDS induced protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24268.2.S1_at--458--6911Chr11:3246409..3246433 (25 bp)
GTATGCAGTCATACTAACCCCATGA
LOC_Os11g06680
Os.24268.2.S1_at--772--2611Chr11:3246394..3246418 (25 bp)
AACCCCATGAACTCTTCTGTAATCA
LOC_Os11g06680
Os.24268.2.S1_at--42--9471Chr11:3246379..3246403 (25 bp)
TCTGTAATCAATTTGGTTCCATACC
LOC_Os11g06680
Os.24268.2.S1_at--799--10591Chr11:3246334..3246358 (25 bp)
TTCTGCCATTCTGGGCTAGGTGGAG
LOC_Os11g06680
Os.24268.2.S1_at--448--11NONE
AGTACTGGGCATCCTTAATTACCGG
NONE
Os.24268.2.S1_at--176--9891NONE
TACTAGGGTATAAGTCGATCTGACT
NONE
Os.24268.2.S1_at--738--4031NONE
CGATCTGACTTTGCCTACCGTAAGA
NONE
Os.24268.2.S1_at--779--9951NONE
TACCGTAAGATATGTGCTTCTGCAA
NONE
Os.24268.2.S1_at--1090--5191Chr11:3246060..3246084 (25 bp)
GCAATTGTTTTTCTGTACCTAGAGA
LOC_Os11g06680
Os.24268.2.S1_at--802--4891Chr11:3246049..3246073 (25 bp)
TCTGTACCTAGAGAGACGAACACGT
LOC_Os11g06680
Os.24268.2.S1_at--360--5791Chr11:3246035..3246059 (25 bp)
GACGAACACGTCAAATGTTTGAGCT
LOC_Os11g06680
Target Sequence 
GTATGCAGTCATACTAACCCCATGAACTCTTCTGTAATCAATTTGGTTCCATACCATCATGTGATAATTTGATCNTTCTG
CCATTCTGGGCTAGGTGGAGGCGTGGAGCAGCTTGAGNATGCTTTAGAAACATCTTCCCAAGCTCAGTTAGATTTATGAA
GATCACGTTACAGTAGAATGTTCTGTTTATTTNTTATTTTGTNGGAGAGGAATCCTCATATTCTTNTGAGATGCTAAGGT
TTGNGCTGGTGTAGTTAATTAGTACTGGGCATCCTTAATTACCGGAAATTGGTAGGGGTACTAGGGTATAAGTCGATCTG
ACTTTGCCTACCGTAAGATATGTGCTTCTGCAATTGTTTTTCTGTACCTAGAGAGACGAACACGTCAAATGTTTGAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24268.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis