Browse Element(s) Details

Os.24341.1.A1_at

Description

gb:CA761678
DB_XREF= gi:25805717
DB_XREF=BR060012A10D12.ab1
CLONE=BR060012A10D12.ab1
TID=Os.24341.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24341 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g46690	4/11	Exostosin family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g46659	NA	NA	6	+	28338761..28339010	NA
LOC_Os06g46670	Os.27451.1.S1_at	11/11	6	+	28344395..28350244	Glutamate receptor 3.4 precursor, putative, expressed
LOC_Os06g46680	Os.49708.1.S1_at	11/11	6	+	28354129..28357367	cytochrome P450, putative, expressed
LOC_Os06g46690	Os.24341.1.A1_at	4/11	6	+	28362871..28367050	Exostosin family protein, expressed
LOC_Os06g46690	Os.5303.1.S2_at	2/11	6	+	28362871..28367050	Exostosin family protein, expressed
LOC_Os06g46700	Os.5303.1.S1_at	4/11	6	+	28367889..28370714	expressed protein
LOC_Os06g46710	NA	NA	6	+	28372190..28375724	retrotransposon protein, putative, unclassified
LOC_Os06g46720	Os.51429.1.S1_at	11/11	6	+	28376095..28381491	retrotransposon protein, putative, unclassified, expressed
LOC_Os06g46730	OsAffx.28138.1.S1_at	11/11	6	+	28382667..28384807	hypothetical protein
LOC_Os06g46740	Os.55380.1.S1_at	11/11	6	+	28387377..28388576	Plastocyanin-like domain containing protein, expressed
LOC_Os06g46754	Os.50821.1.S1_at	10/11	6	+	28389335..28395009	p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754	Os.57130.1.S1_at	10/11	6	+	28389335..28395009	p21-rho-binding domain-containing protein, putative, expressed
LOC_Os06g46754	OsAffx.28139.1.S1_at	3/11	6	+	28389335..28395009	p21-rho-binding domain-containing protein, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0016020	cellular_component	membrane
GO:0003824	molecular_function	catalytic activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.24341.1.A1_at--478--473	1	NONE	GCTGTGCGCGGCTAAGCTAGGATAA	NONE
Os.24341.1.A1_at--326--645	1	NONE	GATAAGCCTTCGTGATTTGTCGACA	NONE
Os.24341.1.A1_at--427--639	1	NONE	GATCGAGGGCATTAACACGCCTTTC	NONE
Os.24341.1.A1_at--908--19	1	Chr06:28365507..28365531 (25 bp)	ATTTGGACGGCAAACGGCCTGACCA	LOC_Os06g46690
Os.24341.1.A1_at--95--63	1	NONE	ATGAATTTTTTGTACGGGCTCGTGC	NONE
Os.24341.1.A1_at--181--759	1	Chr06:28365430..28365454 (25 bp)	GGGCTCGTGCGATGACTCGATGATC	LOC_Os06g46690
Os.24341.1.A1_at--924--249	1	Chr06:28365351..28365374 (24 bp)	AACATGCATGCTTTGTGACGGCAAC	LOC_Os06g46690
Os.24341.1.A1_at--10--575	1	NONE	GACGGCAACGCCTAGCTAATTTTAC	NONE
Os.24341.1.A1_at--58--981	1	Chr06:28365190..28365214 (25 bp)	TAACGTGTGGACCTACCTAATTATA	LOC_Os06g46690
Os.24341.1.A1_at--282--701	1	NONE	GTACACGTAGTACTTCCCTACTTTG	NONE
Os.24341.1.A1_at--130--245	1	NONE	AAAATGCCCCTGTAGTATACTAGAG	NONE

Target Sequence

GCTGTGCGCGGCTAAGCTAGGATAAGCCTTCGTGATTTGTCGACAACCGATCGAGGGCATTAACACGCCTTTCTTGCCGA
TTTGGACGGCAAACGGCCTGACCAAATGCAGCCATCCCTAAACTTTACACAACTACAGGGATATATGAATTTTTTGTACG
GGCTCGTGCGATGACTCGATGATCGATCGGTTGTTGGTTGATGGGTGCATCGCTTTGGTTTTGCTCTTTGTTTGGTGAAA
CATGCATGCTTTGTGACGGCAACGCCTAGCTAATTTTACAGGCAGAGGCCACCCTGCTCCATTATTAGAGGTCATCCCAA
TTTATTATCATCATCAGCCGGGTTTTAGATGATTTTGTAATTAGAGTACTTTTAATTATTTGTGCTCAATTTATAGATAT
AACGTGTGGACCTACCTAATTATAACCTACGTAGTACACGTAGTACTTCCCTACTTTGACAAAATGCCCCTGTAGTATAC
TAGAG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis