Browse Element(s) Details


Os.2448.1.S1_at

Description gb:AF250327.2
DB_XREF= gi:31324465
GEN=RACB
TID=Os.2448.1
CNT=112
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2448 (NCBI UniGene Cluster)
DEF=Oryza sativa small GTP-binding protein RACBP (RACB) mRNA, complete cds.
PROD=small GTP-binding protein RACBP
FL= gb:AK064827.1 gb:AF250327.2 gb:AK100842.1 gb:AK100585.1 gb:AK061649.1 gb:AK100650.1 gb:AK119517.1 gb:AK061743.1 gb:AK069443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0284011/11RAC-like GTP binding protein RHO1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g02780Os.26226.1.S1_at10/112+1050786..1056830protein kinase family protein, putative, expressed
LOC_Os02g02790Os.56801.1.S1_at11/112+1061877..1066211C2 domain containing protein, expressed
LOC_Os02g02800Os.52287.1.S1_at10/112+1067045..1069130LOC124512 protein, putative, expressed
LOC_Os02g02810OsAffx.2489.1.S1_s_at11/112+1069636..1072087expressed protein
LOC_Os02g02810OsAffx.2489.1.S1_at10/112+1069636..1072087expressed protein
LOC_Os02g02810Os.52287.2.S1_at1/112+1069636..1072087expressed protein
LOC_Os02g02820Os.50000.1.S1_at11/112+1073553..1076776Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os02g02830Os.22788.1.S1_at11/112+1078475..1079652Ubiquitin-conjugating enzyme E2-17 kDa 9, putative, expressed
LOC_Os02g02840Os.2448.1.S1_at11/112+1080513..1084282RAC-like GTP binding protein RHO1, putative, expressed
LOC_Os02g02850OsAffx.24073.1.S1_at9/112+1086750..1089571C-1-tetrahydrofolate synthase, cytoplasmic, putative, expressed
LOC_Os02g02860Os.7227.1.S1_at11/112+1090375..1095969Glutamyl-tRNA synthetase, putative, expressed
LOC_Os02g02870Os.4724.1.S1_at11/112+1103043..1104294Zinc knuckle family protein, expressed
LOC_Os02g02880Os.11422.1.S1_at11/112+1106261..1111999expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009734biological_processauxin mediated signaling pathway
GO:0009738biological_processabscisic acid mediated signaling
GO:0009860biological_processpollen tube growth
GO:0030833biological_processregulation of actin filament polymerization
GO:0030834biological_processregulation of actin filament depolymerization
GO:0040007biological_processgrowth
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0005886cellular_componentplasma membrane
GO:0009524cellular_componentphragmoplast
GO:0030427cellular_componentsite of polarized growth
GO:0003924molecular_functionGTPase activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2448.1.S1_at--409--1211Chr02:1081328..1081352 (25 bp)
AGTTTTTTGTGGACCATCCTGGTGC
LOC_Os02g02840
Os.2448.1.S1_at--863--3691Chr02:1081169..1081322 (25 bp)
CTATCACCACTGCTCAGGGAGAGGA
LOC_Os02g02840
Os.2448.1.S1_at--17--1431Chr02:1081140..1081164 (25 bp)
AGAAAGCAAATAGGCGCCCCATACT
LOC_Os02g02840
Os.2448.1.S1_at--527--7071Chr02:1080997..1081021 (25 bp)
GTCAAGGGCGTTTTCGATGCGGCAA
LOC_Os02g02840
Os.2448.1.S1_at--29--8371Chr02:1080917..1080941 (25 bp)
GGCGTGCTCCATTTTGTGATCTAAT
LOC_Os02g02840
Os.2448.1.S1_at--568--51Chr02:1080843..1080867 (25 bp)
ATTGTTGCGTCTTGCTTCAGCGAAA
LOC_Os02g02840
Os.2448.1.S1_at--215--5891Chr02:1080752..1080776 (25 bp)
GAGCGATCCGTTTGTTTCATTTTCT
LOC_Os02g02840
Os.2448.1.S1_at--582--171Chr02:1080734..1080758 (25 bp)
ATTTTCTCCTTTCTGCCTTGTGATT
LOC_Os02g02840
Os.2448.1.S1_at--1078--3611Chr02:1080718..1080742 (25 bp)
CTTGTGATTATCTCGTGTGACTGAC
LOC_Os02g02840
Os.2448.1.S1_at--460--9351Chr02:1080597..1080621 (25 bp)
TCGCACTCAGTTTATTCTTTTCCTT
LOC_Os02g02840
Os.2448.1.S1_at--217--10571Chr02:1080583..1080607 (25 bp)
TTCTTTTCCTTCTTATTTCACTTCA
LOC_Os02g02840
Target Sequence 
AGTTTTTTGTGGACCATCCTGGTGCTGTTCCTATCACCACTGCTCAGGGAGAGGAACTAAGAAAGCAAATAGGCGCCCCA
TACTACATCGAATGCAGCTCAAAGACCCAACTAAACGTCAAGGGCGTTTTCGATGCGGCAATAAAGGTGGTGCTGCAGCC
ACCCAAGGCGAAGAAGAAGAAAAAGGCGCAAAGGGGGGCGTGCTCCATTTTGTGATCTAATCATCAGTAGACGACGNNAA
GAAGAAGAACGATGAAGTTGCCAGGCTTTATTATTGTTGCGTCTTGCTTCAGCGAAACAGCATTCATGGTCCGGGGATCC
TAGTTTACTGGCAGCTGCAGCAAGGCCTCTTTGTCGAGGCAATGAGCGATCCGTTTGTTTCATTTTCTCCTTTCTGCCTT
GTGATTATCTCGTGTGACTGACAAGTCGTGGCAATTAGGTAACTTTCCTAGATGGTATTTCCTGTGTTTGAGAAAAAAAA
TTCTTGTTATCCCTGTTTCATAAGTAGACATGATGTAATCGCACTCAGTTTATTCTTTTCCTTCTTATTTCACTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2448.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis