Browse Element(s) Details


Os.24503.1.S1_x_at

Description gb:AK067364.1
DB_XREF= gi:32977382
TID=Os.24503.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24503 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013087K18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013100N05, full insert sequence.
FL= gb:AK067364.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3596011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g35910OsAffx.17353.2.S1_at11/118+22514524..22520039expressed protein
LOC_Os08g35920Os.25411.1.A1_at1/118+22520415..22522141transposon protein, putative, Pong sub-class
LOC_Os08g35930Os.24413.1.S1_at11/118+22523447..22526710F-box domain containing protein, expressed
LOC_Os08g35939OsAffx.17354.1.S1_at11/118+22527729..22537140expressed protein
LOC_Os08g35939OsAffx.17354.1.S1_x_at11/118+22527729..22537140expressed protein
LOC_Os08g35939Os.52674.1.S1_at10/118+22527729..22537140expressed protein
LOC_Os08g35948Os.52936.1.S1_at11/118+22537718..22542745expressed protein
LOC_Os08g35960Os.24503.1.S1_x_at11/118+22542928..22546470F-box domain containing protein, expressed
LOC_Os08g35960Os.24503.2.S1_at11/118+22542928..22546470F-box domain containing protein, expressed
LOC_Os08g35970OsAffx.8061.1.S1_at9/118+22547210..22550393transposon protein, putative, Mutator sub-class
LOC_Os08g35980Os.48030.1.A1_at10/118+22550767..22551650hypothetical protein
LOC_Os08g35990OsAffx.29544.1.S1_x_at10/118+22552391..22553375hypothetical protein
LOC_Os08g36000OsAffx.29545.1.S1_at11/118+22555060..22556693F-box domain containing protein
LOC_Os08g36010Os.51858.1.S1_at11/118+22559509..22561488F-box domain containing protein, expressed
LOC_Os08g36020Os.47915.1.S1_at11/118+22569216..22574706major intrinsic protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24503.1.S1_x_at--51--7531Chr08:22544679..22544703 (25 bp)
GTGGACCAACAGTCTTTTTGCAAAT
LOC_Os08g35960
Os.24503.1.S1_x_at--562--2331Chr08:22544637..22544661 (25 bp)
AAAGAGTGCCACTTGCTGGTCAAAT
LOC_Os08g35960
Os.24503.1.S1_x_at--558--6471Chr08:22544543..22544567 (25 bp)
GATACTGGTTCATACTCGAAGCCTA
LOC_Os08g35960
Os.24503.1.S1_x_at--345--1351Chr08:22543360..22543384 (25 bp)
AGAGAAGCACTCTTTGCACCTTTGA
LOC_Os08g35960
Os.24503.1.S1_x_at--1013--3671Chr08:22543349..22543373 (25 bp)
CTTTGCACCTTTGATCCACAGGAGG
LOC_Os08g35960
Os.24503.1.S1_x_at--830--3291Chr08:22543333..22543357 (25 bp)
CACAGGAGGTTCACATGGTCAATTA
LOC_Os08g35960
Os.24503.1.S1_x_at--83--1211Chr08:22543303..22543327 (25 bp)
AGTTACTCATACTTCCGTACATTCC
LOC_Os08g35960
Os.24503.1.S1_x_at--673--5111Chr08:22543192..22543216 (25 bp)
GCACTCAGCTTCGATCGATTGGCAA
LOC_Os08g35960
Os.24503.1.S1_x_at--230--3811Chr08:22543133..22543157 (25 bp)
CTCCTCGTCGTAGTTGTAGCACAAT
LOC_Os08g35960
Os.24503.1.S1_x_at--1023--9831Chr08:22543106..22543130 (25 bp)
TACAAGTCGCATGAGTTGACCCTAT
LOC_Os08g35960
Os.24503.1.S1_x_at--637--6651Chr08:22543092..22543116 (25 bp)
GTTGACCCTATACCGCAAACTATAT
LOC_Os08g35960
Target Sequence 
GTGGACCAACAGTCTTTTTGCAAATCTTGATTTTGTTAGCATAAAGAGTGCCACTTGCTGGTCAAATGAGATGCGCTTTA
TTGAATTTGTTCTATCCAAAGCAAGATTACTTGGTGAATTTTATATTTATCATGATGATACTGGTTCATACTCGAAGCCT
AGAGAAGAGGCAATTATTGAGTTAGCAAAATATAAAAGAGCATCACCAAAGGCAAAAGTATTCTTCAGGGATATGGAGGA
TACATGGCTGTACTCATGAGAATCGAGACTCAGAGAAGCACTCTTTGCACCTTTGATCCACAGGAGGTTCACATGGTCAA
TTATACCAAGTTACTCATACTTCCGTACATTCCTGAAAATGCTTCAGATAATCATGGCGTGATTATTCATTATCTTTCTC
AATGGAAAGTCGTCTCTTGAATAAACATGAGTGATTACAGCACTCAGCTTCGATCGATTGGCAAATCTGTATATTTACTG
GAGATGGGGCATTCCATCCTCCTCGTCGTAGTTGTAGCACAATCTTACAAGTCGCATGAGTTGACCCTATACCGCAAACT
ATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24503.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis