Browse Element(s) Details


Os.24641.1.A1_at

Description gb:CA762287
DB_XREF= gi:25806326
DB_XREF=BR060012B10D08.ab1
CLONE=BR060012B10D08.ab1
TID=Os.24641.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24641 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein pir:T47796 (A.thaliana) T47796 ABC transporter-like protein - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3758011/11multidrug-resistance associated protein 3, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37560Os.8202.1.S1_at9/1112+23015182..23019780phospholipase C, putative, expressed
LOC_Os12g37564OsAffx.20000.1.S1_at11/1112+23020782..23022025hypothetical protein
LOC_Os12g37570Os.27404.1.A1_at11/1112+23027641..23034880protein kinase family protein, putative, expressed
LOC_Os12g37570Os.57425.1.S1_x_at9/1112+23027641..23034880protein kinase family protein, putative, expressed
LOC_Os12g37580Os.24641.1.A1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37580OsAffx.20001.1.S1_at11/1112+23038371..23044189multidrug-resistance associated protein 3, putative
LOC_Os12g37590Os.53783.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37590Os.8542.1.S1_at11/1112+23046516..23051034prefoldin subunit 3, putative, expressed
LOC_Os12g37600OsAffx.32071.1.S1_x_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.32071.1.S1_at11/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24019.1.S1_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37600OsAffx.24066.1.S1_x_at1/1112+23058096..23060601Acyltransferase family protein
LOC_Os12g37610Os.11210.1.S1_at10/1112+23063456..23065827ribosomal protein S6 containing protein, expressed
LOC_Os12g37620OsAffx.22651.1.S1_x_at5/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37620OsAffx.22651.3.A1_x_at4/1112+23066655..23067836hypothetical protein
LOC_Os12g37630Os.27401.1.S1_at11/1112+23068509..23071642Phospholipase/Carboxylesterase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24641.1.A1_at--933--6571Chr12:23040473..23040497 (25 bp)
GATTCTGTTCTAGTAAGTATTCATG
LOC_Os12g37580
Os.24641.1.A1_at--179--3691Chr12:23040482..23040506 (25 bp)
CTAGTAAGTATTCATGCTTTCTTGA
LOC_Os12g37580
Os.24641.1.A1_at--897--8831Chr12:23040520..23040544 (25 bp)
TGATAACGTCATGATGCCTCAATAA
LOC_Os12g37580
Os.24641.1.A1_at--87--4031Chr12:23040526..23040550 (25 bp)
CGTCATGATGCCTCAATAACCACTT
LOC_Os12g37580
Os.24641.1.A1_at--629--6351Chr12:23040532..23040556 (25 bp)
GATGCCTCAATAACCACTTATATTC
LOC_Os12g37580
Os.24641.1.A1_at--1068--6871Chr12:23040559..23040583 (25 bp)
GTATTAAGTATTCATGCTTTGTTGA
LOC_Os12g37580
Os.24641.1.A1_at--825--10731Chr12:23040589..23040613 (25 bp)
TTGCATTTTGATACTGTCATGACTC
LOC_Os12g37580
Os.24641.1.A1_at--289--7131Chr12:23040604..23040628 (25 bp)
GTCATGACTCATGATGCCTCAATAA
LOC_Os12g37580
Os.24641.1.A1_at--250--5711Chr12:23040609..23040633 (25 bp)
GACTCATGATGCCTCAATAATCACA
LOC_Os12g37580
Os.24641.1.A1_at--367--3131Chr12:23040623..23040647 (25 bp)
CAATAATCACATATACTCGTGTCCG
LOC_Os12g37580
Os.24641.1.A1_at--451--3531Chr12:23040662..23040686 (25 bp)
CATCCACACTCCTCAATAATCTGGT
LOC_Os12g37580
Target Sequence 
GATTCTGTTCTAGTAAGTATTCATGCTTTCTTGAGCAATTTGCGTTNTGATAACGTCATGATGCCTCAATAACCACTTAT
ATTCTAGTATTAAGTATTCATGCTTTGTTGAGCAATTTGCATTTTGATACTGTCATGACTCATGATGCCTCAATAATCAC
ATATACTCGTGTCCGNNTTCGTTGTTCGCCCATCCACACTCCTCAATAATCTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24641.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis