Browse Element(s) Details


Os.24697.1.A1_s_at

Description gb:CB638126
DB_XREF= gi:29633117
DB_XREF=OSJNEa06B07.r
CLONE=OSJNEa06B07
TID=Os.24697.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24697 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein sp:Q9S7J8 (A.thaliana) AHM5_ARATH Copper-transporting ATPase RAN1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0763011/11Copper-transporting ATPase RAN1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g07580OsAffx.24149.1.S1_s_at11/112+3927873..3928668hypothetical protein
LOC_Os02g07580Os.23520.1.A1_at4/112+3927873..3928668hypothetical protein
LOC_Os02g07590OsAffx.11929.1.S1_at10/112+3929703..3930203NA
LOC_Os02g07600OsAffx.24150.1.S1_x_at11/112+3932581..3933219Kunitz-type trypsin inhibitor, putative
LOC_Os02g07610Os.26886.1.S1_x_at10/112+3935178..3938525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07610Os.26886.3.S1_x_at5/112+3935178..3938525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07610OsAffx.16244.1.S1_x_at1/112+3935178..3938525transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620Os.26886.2.S1_s_at11/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620Os.26886.6.S1_s_at11/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620OsAffx.16467.1.S1_at9/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07620OsAffx.3425.1.S1_at1/112+3941189..3944282transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g07630Os.24697.1.A1_s_at11/112+3950336..3955896Copper-transporting ATPase RAN1, putative, expressed
LOC_Os02g07640OsAffx.24152.1.S1_at11/112+3964023..3965483hypothetical protein
LOC_Os02g07650Os.8770.1.S1_at11/112+3971428..3975143zinc-binding protein, putative, expressed
LOC_Os02g07659NANA2+3980820..3981482NA

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Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0009767biological_processphotosynthetic electron transport
GO:0009873biological_processethylene mediated signaling pathway
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009941cellular_componentchloroplast envelope
GO:0005375molecular_functioncopper ion transporter activity
GO:0015662molecular_functionATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24697.1.A1_s_at--1020--8431Chr02:3950891..3950915 (25 bp)
GGCCATTGGTGCAGGAACAGACATT
LOC_Os02g07630
Os.24697.1.A1_s_at--686--771Chr02:3950847..3950871 (25 bp)
ATGTGCTGGTGCGAAACAACCTTGA
LOC_Os02g07630
Os.24697.1.A1_s_at--203--9611Chr02:3950817..3950841 (25 bp)
TCATCACAGCAATTGACCTCTCAAG
LOC_Os02g07630
Os.24697.1.A1_s_at--197--8931Chr02:3950804..3950828 (25 bp)
TGACCTCTCAAGGAAGACGTTCAGC
LOC_Os02g07630
Os.24697.1.A1_s_at--753--531Chr02:3950737..3950761 (25 bp)
ATCGCTATCCCGGTTGCTGCTGGAG
LOC_Os02g07630
Os.24697.1.A1_s_at--40--10731Chr02:3950724..3950748 (25 bp)
TTGCTGCTGGAGCACTCTTCCCATT
LOC_Os02g07630
Os.24697.1.A1_s_at--1011--2271Chr02:3950688..3950712 (25 bp)
AAATGCCACCTTGGCTGGCTGGTGC
LOC_Os02g07630
Os.24697.1.A1_s_at--196--8491Chr02:3950673..3950697 (25 bp)
TGGCTGGTGCTTGCATGGCGTTCTC
LOC_Os02g07630
Os.24697.1.A1_s_at--302--6792Chr11:7581932..7581952 (21 bp)
GTTAGTGTAGTATGTTCCTCTCTGT
NONE
Os.24697.1.A1_s_at--951--10051Chr02:3950637..3950661 (25 bp)
TAGTATGTTCCTCTCTGTGGTTGAG
LOC_Os02g07630
Os.24697.1.A1_s_at--522--9531Chr02:3950416..3950440 (25 bp)
TCTACTGAAGATTTACACACGATGC
LOC_Os02g07630
Target Sequence 
GGCCATTGGTGCAGGAACAGACATTGCAATTGAAGCAGCGGACTATGTGCTGGTGCGAAACAACCTTGAAGATGTCATCA
CAGCAATTGACCTCTCAAGGAAGACGTTCAGCCGAATCCGATGGAACTACTTCTTTGCCATGGCGTACAACATNATCGCT
ATCCCGGTTGCTGCTGGAGCACTCTTCCCATTCACCGGCCTCCAAATGCCACCTTGGCTGGCTGGTGCTTGCATGGCGTT
CTCNTCTGTTAGTGTAGTATGTTCCTCTCTGTGGTTGAGGAGATACAGAAAACCAAGGCTCNCAACCCTGTTACAAATAA
CTGTAGAGTGAATTTTTTTGCCCCCTTCTTTTTCTTTTTCTTTTTTGCATTATTCNCTTAATAGTAGAAATGAGAGGTGC
CTATNTGTGGATGTACATGAATACNCGATACATTTTTTTACCCCCTAATGCCTGTATATATGGTNAAGCTATACTTCTAC
TGAAGATTTACACACGATGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24697.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis