Browse Element(s) Details


Os.24721.1.S1_at

Description gb:AK068857.1
DB_XREF= gi:32978882
TID=Os.24721.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24721 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013169A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013169A12, full insert sequence.
FL= gb:AK068857.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g280409/11prolyl oligopeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g27970NANA9+16991505..16992747hypothetical protein
LOC_Os09g27980OsAffx.17941.2.S1_at10/119+16995554..16998348emp24/gp25L/p24 family protein, expressed
LOC_Os09g27990Os.8782.1.S1_at11/119+16998460..17000373Annexin family protein, expressed
LOC_Os09g27990Os.46749.1.S1_x_at11/119+16998460..17000373Annexin family protein, expressed
LOC_Os09g28000Os.27824.1.S1_at11/119+17002039..17004693signal peptidase I family protein, expressed
LOC_Os09g28000OsAffx.12450.2.S1_x_at1/119+17002039..17004693signal peptidase I family protein, expressed
LOC_Os09g28019Os.16158.1.S1_at11/119+17007755..17013359nucleoporin, putative, expressed
LOC_Os09g28040Os.24721.1.S1_at9/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28040OsAffx.5632.1.S1_x_at2/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28040OsAffx.5632.1.S1_at2/119+17014449..17018852prolyl oligopeptidase family protein, expressed
LOC_Os09g28050Os.11703.1.S1_at11/119+17023574..17027545aminotransferase, classes I and II family protein, expressed
LOC_Os09g28060Os.19116.1.S1_x_at11/119+17032402..17034507MORN repeat-containing protein, putative, expressed
LOC_Os09g28060Os.19116.1.S1_at11/119+17032402..17034507MORN repeat-containing protein, putative, expressed
LOC_Os09g28060Os.19116.2.S1_at11/119+17032402..17034507MORN repeat-containing protein, putative, expressed
LOC_Os09g28070NANA9+17043745..17047410retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24721.1.S1_at--106--6411Chr09:17015748..17015772 (25 bp)
GATCTGATCTGCTATCACGAGGGCA
LOC_Os09g28040
Os.24721.1.S1_at--207--6131NONE
GAGGGCAGTTCTGGCGTCCAACAAG
NONE
Os.24721.1.S1_at--431--7271Chr09:17015706..17015730 (25 bp)
GTCCACAACGCATGGTATCTGCTAC
LOC_Os09g28040
Os.24721.1.S1_at--38--2871Chr09:17015680..17015704 (25 bp)
AAGTGCTGCCCATGATTCCTTGTTG
LOC_Os09g28040
Os.24721.1.S1_at--86--8171Chr09:17015401..17015425 (25 bp)
GGAACAAAGCTCTTGCACACTTGGC
LOC_Os09g28040
Os.24721.1.S1_at--995--10151Chr09:17015325..17015349 (25 bp)
TATCTAGTTATCTGGCTGCTTGCAC
LOC_Os09g28040
Os.24721.1.S1_at--1060--3831Chr09:17015310..17015334 (25 bp)
CTGCTTGCACCACACTATTGTTTTA
LOC_Os09g28040
Os.24721.1.S1_at--405--3051Chr09:17015270..17015294 (25 bp)
AATCTGCATCTTATGACTGCCCAAG
LOC_Os09g28040
Os.24721.1.S1_at--962--1971Chr09:17015255..17015279 (25 bp)
ACTGCCCAAGTGATAGCTATGACCT
LOC_Os09g28040
Os.24721.1.S1_at--252--3011Chr09:17015174..17015198 (25 bp)
AATGACCATATGTCCCTGCTGATAT
LOC_Os09g28040
Os.24721.1.S1_at--688--4311NONE
CCTTCTACGCACCTCAATTTATATT
NONE
Target Sequence 
GATCTGATCTGCTATCACGAGGGCAGTTCTGGCGTCCAACAAGTCCACAACGCATGGTATCTGCTACCAAGTGCTGCCCA
TGATTCCTTGTTGGGGGAACAAAGCTCTTGCACACTTGGCTTGGAGCATTAAGGCAATTGCACCATAACAGAAGCGGACC
AAAATATACCTTATCTAGTTATCTGGCTGCTTGCACCACACTATTGTTTTATCCTTCTGTTCTTAAAATCTGCATCTTAT
GACTGCCCAAGTGATAGCTATGACCTTGTGGGTCAGGTGAATTTAGCGTCATGAAGTGGATGGAACAGTTGGACACTACT
TGAATGACCATATGTCCCTGCTGATATGAAGGCTGTAACAAAGCACAGGTTGGAAATCTGCTGCAGGTTGTGACAGCACT
GCGTATTGGAAATTCAGTTACTGCGAGATTTCATCAGATGGAACTTAGAGCTTCGGTTTTGNCTTCTGGNTTTCATTTCT
TCAGNTAATCTGGGATAAAATGGAACCTTCTACGCACCTCAATTTATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24721.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis