Browse Element(s) Details


Os.24850.1.S1_at

Description gb:AK065692.1
DB_XREF= gi:32975710
TID=Os.24850.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24850 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0042A10.25 (P0042A10.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038H22, full insert sequence.
FL= gb:AK065692.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5272011/11auxin-induced, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52690Os.23219.1.S1_at11/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52690Os.23219.2.S1_x_at10/111+30620790..30623387retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os01g52700NANA1+30631199..30632388hypothetical protein
LOC_Os01g52710Os.32160.1.S1_a_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.2.S1_x_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52710Os.32160.1.S1_at11/111+30638225..30642621Glycosyl transferase family 8 protein, expressed
LOC_Os01g52720Os.24850.1.S1_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720Os.24850.1.S1_x_at11/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52720OsAffx.2318.2.A1_at8/111+30647596..30650841auxin-induced, putative, expressed
LOC_Os01g52730Os.19385.1.S2_at11/111+30649597..30651931expressed protein
LOC_Os01g52730Os.19385.1.S1_at11/111+30649597..30651931expressed protein
LOC_Os01g52730Os.19385.2.S1_at2/111+30649597..30651931expressed protein
LOC_Os01g52740NANA1+30667159..30668442expressed protein
LOC_Os01g52750Os.20579.1.S1_at11/111+30670927..30675782Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24850.1.S1_at--193--1731Chr01:30650519..30650543 (25 bp)
ACCAGGTGATTTTAGGCTAGAGGTT
LOC_Os01g52720
Os.24850.1.S1_at--1129--10331Chr01:30650529..30650553 (25 bp)
TTTAGGCTAGAGGTTGATTGGATCA
LOC_Os01g52720
Os.24850.1.S1_at--961--991Chr01:30650539..30650563 (25 bp)
AGGTTGATTGGATCAAGGCATTGAG
LOC_Os01g52720
Os.24850.1.S1_at--955--4931Chr01:30650556..30650580 (25 bp)
GCATTGAGGACACTCTGAATTTGTG
LOC_Os01g52720
Os.24850.1.S1_at--972--5611Chr01:30650564..30650588 (25 bp)
GACACTCTGAATTTGTGGTTTCCAC
LOC_Os01g52720
Os.24850.1.S1_at--390--8631Chr01:30650577..30650601 (25 bp)
TGTGGTTTCCACAAATCGGTCTTTT
LOC_Os01g52720
Os.24850.1.S1_at--564--9431Chr01:30650592..30650616 (25 bp)
TCGGTCTTTTTGTAGGATTTCTCAG
LOC_Os01g52720
Os.24850.1.S1_at--467--7151Chr01:30650595..30650619 (25 bp)
GTCTTTTTGTAGGATTTCTCAGGGC
LOC_Os01g52720
Os.24850.1.S1_at--220--9671Chr01:30650743..30650767 (25 bp)
TCAGCGCAGATGAATAATGAGGTCT
LOC_Os01g52720
Os.24850.1.S1_at--363--9771Chr01:30650757..30650781 (25 bp)
TAATGAGGTCTCTTTTGCTTTTGGG
LOC_Os01g52720
Os.24850.1.S1_at--185--251Chr01:30650790..30650813 (24 bp)
ATATACAAATGTATCACCTGTTTCC
LOC_Os01g52720
Target Sequence 
ACCAGGTGATTTTAGGCTAGAGGTTGATTGGATCAAGGCATTGAGGACACTCTGAATTTGTGGTTTCCACAAATCGGTCT
TTTTGTAGGATTTCTCAGGGCTGGAAATTTCTTACCGGCACTTTTTCATGTGATAATTGCTGAATATCNCGAGGCATGGA
GATGCGTCATGCAGTTTGTATTACTCCTAGTCAATACAATGGGACATCGAAAGGAGGCAACTGTTCAGCGCAGATGAATA
ATGAGGTCTCTTTTGCTTTTGGGGGAAATGAATATACAAATGTATCACCTGTTTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24850.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis