Browse Element(s) Details


Os.24858.1.S1_at

Description gb:AK064439.1
DB_XREF= gi:32974457
TID=Os.24858.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.24858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-110-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-110-E01, full insert sequence.
FL= gb:AK064439.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3248010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32450Os.5852.1.S1_at11/117+19303122..19307775transglutaminase, putative, expressed
LOC_Os07g32460Os.18357.1.S1_at11/117+19308275..19313784SH3 domain-containing protein 3, putative, expressed
LOC_Os07g32470OsAffx.28711.1.S1_x_at11/117+19321824..19322354hypothetical protein
LOC_Os07g32470OsAffx.28711.1.S1_at11/117+19321824..19322354hypothetical protein
LOC_Os07g32480OsAffx.15494.1.S1_x_at10/117+19327032..19330212Protein kinase domain containing protein, expressed
LOC_Os07g32480Os.24858.1.S1_at10/117+19327032..19330212Protein kinase domain containing protein, expressed
LOC_Os07g32480OsAffx.15494.1.S1_at6/117+19327032..19330212Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24858.1.S1_at--251--7292Chr07:19329978..19330002 (25 bp)
GTGCCTATCCTGACCGAGACATATA
LOC_Os07g32480
Os.24858.1.S1_at--230--5991Chr07:19329993..19330017 (25 bp)
GAGACATATACGCATCTCGCGTTTC
LOC_Os07g32480
Os.24858.1.S1_at--183--471Chr07:19330006..19330030 (25 bp)
ATCTCGCGTTTCATCCTCATCATTT
LOC_Os07g32480
Os.24858.1.S1_at--293--1251Chr07:19330076..19330100 (25 bp)
AGATACCTTCCGTAACTTCGTAGCA
LOC_Os07g32480
Os.24858.1.S1_at--746--7052Chr07:19330087..19330111 (25 bp)
GTAACTTCGTAGCACTTCCTCTGTG
LOC_Os07g32480
Os.24858.1.S1_at--1093--3311Chr07:19330099..19330123 (25 bp)
CACTTCCTCTGTGCGTGCGTGTGCA
LOC_Os07g32480
Os.24858.1.S1_at--874--7292Chr07:19330113..19330137 (25 bp)
GTGCGTGTGCAGCAGTAATTAACGT
LOC_Os07g32480
Os.24858.1.S1_at--163--1152Chr07:19330126..19330150 (25 bp)
AGTAATTAACGTGCCACATCTCCAC
LOC_Os07g32480
Os.24858.1.S1_at--855--2091Chr07:19330141..19330165 (25 bp)
ACATCTCCACTTTGAAAGCTGAAAC
LOC_Os07g32480
Os.24858.1.S1_at--806--1591Chr07:19330157..19330181 (25 bp)
AGCTGAAACATCTACTATTGGGCCA
LOC_Os07g32480
Os.24858.1.S1_at--741--8111Chr06:11057345..11057364 (20 bp)
GGAAATTGCGTACAGTATCTTCTTC
NONE
Target Sequence 
GTGCCTATCCTGACCGAGACATATACGCATCTCGCGTTTCATCCTCATCATTTTTCCCGATTCCCTCGTGTNGCCTGTGT
GTAAAGTGGTGGAGTATAAGATACCTTCCGTAACTTCGTAGCACTTCCTCTGTGCGTGCGTGTGCAGCAGTAATTAACGT
GCCACATCTCCACTTTGAAAGCTGAAACATCTACTATTGGGCCAGATGGAAATTGCGTACAGTATCTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis