Browse Element(s) Details


OsAffx.28711.1.S1_x_at

Description tigr:9635.m03190
TID=OsAffx.28711.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3247011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32430Os.14760.1.S1_at11/117+19289201..19297400Pre-mRNA splicing factor ATP-dependent RNA helicase PRP16, putative, expressed
LOC_Os07g32440NANA7+19300209..19300864hypothetical protein
LOC_Os07g32450Os.5852.1.S1_at11/117+19303122..19307775transglutaminase, putative, expressed
LOC_Os07g32460Os.18357.1.S1_at11/117+19308275..19313784SH3 domain-containing protein 3, putative, expressed
LOC_Os07g32470OsAffx.28711.1.S1_x_at11/117+19321824..19322354hypothetical protein
LOC_Os07g32470OsAffx.28711.1.S1_at11/117+19321824..19322354hypothetical protein
LOC_Os07g32480OsAffx.15494.1.S1_x_at10/117+19327032..19330212Protein kinase domain containing protein, expressed
LOC_Os07g32480Os.24858.1.S1_at10/117+19327032..19330212Protein kinase domain containing protein, expressed
LOC_Os07g32480OsAffx.15494.1.S1_at6/117+19327032..19330212Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28711.1.S1_x_at--259--10571Chr07:19322259..19322283 (25 bp)
TTCTTTCTTCCATGCCAGGGAGGAG
LOC_Os07g32470
OsAffx.28711.1.S1_x_at--1012--10531Chr07:19322255..19322279 (25 bp)
TTCTTCCATGCCAGGGAGGAGGCCG
LOC_Os07g32470
OsAffx.28711.1.S1_x_at--1076--6211Chr07:19322237..19322261 (25 bp)
GAGGCCGAGCCGCATGACGCTGCTG
LOC_Os07g32470
OsAffx.28711.1.S1_x_at--664--4511Chr07:19322229..19322253 (25 bp)
GCCGCATGACGCTGCTGGAGGCTGT
LOC_Os07g32470
OsAffx.28711.1.S1_x_at--17--8351Chr07:19322210..19322234 (25 bp)
GGCTGTGGACACAGAGCTCTCCTCG
LOC_Os07g32470
OsAffx.28711.1.S1_x_at--182--8631Chr07:19322051..19322075 (25 bp)
TGGTGGTGGACAACCTCGAGCTCTT
LOC_Os07g32470
OsAffx.28711.1.S1_x_at--1073--4071Chr07:19322035..19322059 (25 bp)
CGAGCTCTTCTCTGGTGACGCGGAT
LOC_Os07g32470
OsAffx.28711.1.S1_x_at--210--9571Chr07:19322030..19322054 (25 bp)
TCTTCTCTGGTGACGCGGATCCGGC
LOC_Os07g32470
OsAffx.28711.1.S1_x_at--748--4571Chr07:19321959..19321983 (25 bp)
GCGCGGTGGAGTTGATGTCTCTCCC
LOC_Os07g32470
OsAffx.28711.1.S1_x_at--191--10531Chr07:19321926..19321950 (25 bp)
TTCACCGATGTTGACGCCGGCGTGC
LOC_Os07g32470
OsAffx.28711.1.S1_x_at--188--10711Chr07:19321916..19321940 (25 bp)
TTGACGCCGGCGTGCCTAAGGTCGT
LOC_Os07g32470
Target Sequence 
TTCTTTCTTCCATGCCAGGGAGGAGGCCGAGCCGCATGACGCTGCTGGAGGCTGTGGACACAGAGCTCTCCTCGTCTCAT
CCACCGGCGTCTGCTCTCGTTCTCCGCCGCGATCACTGCCATCTTGCCCTGCCAGCACCCACACTCTGCCACCGCCGCCA
CCAGGCCCACCACCACCATCAACACCACCCACCACGACGGCGTGGATCTGGTGGTGGACAACCTCGAGCTCTTCTCTGGT
GACGCGGATCCGGCGGTTGGCCGGCGGCTACAAGGGGAAATCGACAGTCGATGGCCGGCGGCGCGGTGGAGTTGATGTCT
CTCCCCTCCTCCCTTCACCGATGTTGACGCCGGCGTGCCTAAGGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28711.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis