Browse Element(s) Details


Os.5852.1.S1_at

Description gb:AK069914.1
DB_XREF= gi:32979938
TID=Os.5852.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5852 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023039M07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023039M07, full insert sequence.
FL= gb:AK069914.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3245011/11transglutaminase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32412Os.9035.1.S1_at11/117+19274830..19279826calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32420Os.32948.1.S1_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.32948.1.S1_s_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.23172.1.S1_x_at1/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32430Os.14760.1.S1_at11/117+19289201..19297400Pre-mRNA splicing factor ATP-dependent RNA helicase PRP16, putative, expressed
LOC_Os07g32440NANA7+19300209..19300864hypothetical protein
LOC_Os07g32450Os.5852.1.S1_at11/117+19303122..19307775transglutaminase, putative, expressed
LOC_Os07g32460Os.18357.1.S1_at11/117+19308275..19313784SH3 domain-containing protein 3, putative, expressed
LOC_Os07g32470OsAffx.28711.1.S1_x_at11/117+19321824..19322354hypothetical protein
LOC_Os07g32470OsAffx.28711.1.S1_at11/117+19321824..19322354hypothetical protein
LOC_Os07g32480OsAffx.15494.1.S1_x_at10/117+19327032..19330212Protein kinase domain containing protein, expressed
LOC_Os07g32480Os.24858.1.S1_at10/117+19327032..19330212Protein kinase domain containing protein, expressed
LOC_Os07g32480OsAffx.15494.1.S1_at6/117+19327032..19330212Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5852.1.S1_at--588--1871Chr07:19307064..19307088 (25 bp)
ACGAGCTGCTGTGTCTGGAGGCAAT
LOC_Os07g32450
Os.5852.1.S1_at--159--8231Chr07:19307083..19307319 (25 bp)
GGCAATCAAGTGTACGTCGGAGGCT
LOC_Os07g32450
Os.5852.1.S1_at--239--8311Chr07:19307316..19307340 (25 bp)
GGCTATGGGAATCCTAAGGCCGCAT
LOC_Os07g32450
Os.5852.1.S1_at--1052--4951Chr07:19307337..19307361 (25 bp)
GCATATGCCGCAAATCCTTATAATG
LOC_Os07g32450
Os.5852.1.S1_at--933--931Chr07:19307467..19307491 (25 bp)
AGGCAAACACTGCTGATTCCGGCTC
LOC_Os07g32450
Os.5852.1.S1_at--280--7791Chr07:19307526..19307550 (25 bp)
GGTGCCTATGACATGCAGAGAGCTA
LOC_Os07g32450
Os.5852.1.S1_at--702--1531Chr07:19307598..19307622 (25 bp)
AGCATACTTTTCTGGGACAAACCTA
LOC_Os07g32450
Os.5852.1.S1_at--229--2371Chr07:19307616..19307640 (25 bp)
AAACCTAACAGCTTTCATGCAATGG
LOC_Os07g32450
Os.5852.1.S1_at--205--3771Chr07:19307671..19307695 (25 bp)
CTCTACTGTGAGTTGTGCTGTACAT
LOC_Os07g32450
Os.5852.1.S1_at--730--4731Chr07:19307687..19307711 (25 bp)
GCTGTACATGTATTACCTCCGTTTC
LOC_Os07g32450
Os.5852.1.S1_at--686--2991Chr07:19307714..19307738 (25 bp)
AATGTTGCAACCTAGGACGTGATTT
LOC_Os07g32450
Target Sequence 
ACGAGCTGCTGTGTCTGGAGGCAATCAAGTGTACGTCGGAGGCTATGGGAATCCTAAGGCCGCATATGCCGCAAATCCTT
ATAATGCTGGATACAACATAAATCAACCACATCCCCAGGCAAACACTGCTGATTCCGGCTCCCAGTTTGGGCCTGGCTCA
ACGCACGCTCCCTGGGGTGCCTATGACATGCAGAGAGCTACTGGACGGAGATGATTTTTTTTTCAGGTGTGTTCAGCAAA
TTACAAAAGCATACTTTTCTGGGACAAACCTAACAGCTTTCATGCAATGGTGAATCATGAATGTATTACTTACTAGTATA
CTCTACTGTGAGTTGTGCTGTACATGTATTACCTCCGTTTCAAAATGTTGCAACCTAGGACGTGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5852.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis