Browse Element(s) Details


OsAffx.15494.1.S1_x_at

Description tigr:9635.m03191
TID=OsAffx.15494.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3248010/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32450Os.5852.1.S1_at11/117+19303122..19307775transglutaminase, putative, expressed
LOC_Os07g32460Os.18357.1.S1_at11/117+19308275..19313784SH3 domain-containing protein 3, putative, expressed
LOC_Os07g32470OsAffx.28711.1.S1_x_at11/117+19321824..19322354hypothetical protein
LOC_Os07g32470OsAffx.28711.1.S1_at11/117+19321824..19322354hypothetical protein
LOC_Os07g32480OsAffx.15494.1.S1_x_at10/117+19327032..19330212Protein kinase domain containing protein, expressed
LOC_Os07g32480Os.24858.1.S1_at10/117+19327032..19330212Protein kinase domain containing protein, expressed
LOC_Os07g32480OsAffx.15494.1.S1_at6/117+19327032..19330212Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15494.1.S1_x_at--925--5531Chr07:19328123..19328147 (25 bp)
GAAACACTGCACAGCGTTGGCATAA
LOC_Os07g32480
OsAffx.15494.1.S1_x_at--335--8771NONE
TGTTTGCTACCCAAGCATGTTGTGG
NONE
OsAffx.15494.1.S1_x_at--869--551Chr07:19329222..19329246 (25 bp)
ATCCGGTGCGGAGTTCTACGGCGAC
LOC_Os07g32480
OsAffx.15494.1.S1_x_at--988--9271Chr07:19329256..19329280 (25 bp)
TCCGGGTTCAGCTGCGTCGAGATGC
LOC_Os07g32480
OsAffx.15494.1.S1_x_at--1052--5751Chr07:19329297..19329442 (25 bp)
GACGTTTCAGGCTGACACTTACGGC
LOC_Os07g32480
OsAffx.15494.1.S1_x_at--997--7111Chr07:19329449..19329473 (25 bp)
GTCATCGCGCACATGATGCTACATG
LOC_Os07g32480
OsAffx.15494.1.S1_x_at--55--6311Chr07:19329481..19329505 (25 bp)
GATGAGCATCCAGAAGACGCCCAGG
LOC_Os07g32480
OsAffx.15494.1.S1_x_at--201--3491Chr07:19329502..19329526 (25 bp)
CAGGCCCGATGGAAGCTACATGTAC
LOC_Os07g32480
OsAffx.15494.1.S1_x_at--1112--2031Chr07:19329533..19329808 (25 bp)
ACATCGCCGTTCAAAAGGTACTGGA
LOC_Os07g32480
OsAffx.15494.1.S1_x_at--880--5891Chr07:19329814..19329838 (25 bp)
GAGCTGTGGAAAAACCTCTTCTCCA
LOC_Os07g32480
OsAffx.15494.1.S1_x_at--307--991Chr07:19329905..19329929 (25 bp)
AGGAGTACCTGTGCAGCAACCGGCA
LOC_Os07g32480
Target Sequence 
GAAACACTGCACAGCGTTGGCATAATTCATGGTGATTTCAAGCCTGACAATATGCTTGTTTGCTACCCAAGCATGTTGTG
GAGAAATCACAGACGAAACCTTCAAAGGCGAGACAAGATCCGAGCGGAATCAGGATTCCCATTCCAGGGGCTCTGCCTTG
TTGACTGGGGCCGTGGCATCGACCTGAACCTCTTCCCATCCGGTGCGGAGTTCTACGGCGACTGCCGAACCTCCGGGTTC
AGCTGCGTCGAGATGCAGGAACAGAGAGCCTGGACGTTTCAGGCTGACACTTACGGCCTCTGCGTCATCGCGCACATGAT
GCTACATGGGACGCAGATGAGCATCCAGAAGACGCCCAGGCCCGATGGAAGCTACATGTACCAGCCCACATCGCCGTTCA
AAAGGTACTGGAACGTGGAGCTGTGGAAAAACCTCTTCTCCACGCTGCTCAACGCGACCTCCAACGGCAGCGACGCGGCC
GTGCTCCGGAGCCTCCGGATGTCCTTCCAGGAGTACCTGTGCAGCAACCGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15494.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis