Browse Element(s) Details


Os.18357.1.S1_at

Description gb:AK073874.1
DB_XREF= gi:32983897
TID=Os.18357.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.18357 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033071B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071B14, full insert sequence.
FL= gb:AK073874.1 gb:AK063908.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3246011/11SH3 domain-containing protein 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32420Os.32948.1.S1_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.32948.1.S1_s_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.23172.1.S1_x_at1/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32430Os.14760.1.S1_at11/117+19289201..19297400Pre-mRNA splicing factor ATP-dependent RNA helicase PRP16, putative, expressed
LOC_Os07g32440NANA7+19300209..19300864hypothetical protein
LOC_Os07g32450Os.5852.1.S1_at11/117+19303122..19307775transglutaminase, putative, expressed
LOC_Os07g32460Os.18357.1.S1_at11/117+19308275..19313784SH3 domain-containing protein 3, putative, expressed
LOC_Os07g32470OsAffx.28711.1.S1_x_at11/117+19321824..19322354hypothetical protein
LOC_Os07g32470OsAffx.28711.1.S1_at11/117+19321824..19322354hypothetical protein
LOC_Os07g32480OsAffx.15494.1.S1_x_at10/117+19327032..19330212Protein kinase domain containing protein, expressed
LOC_Os07g32480Os.24858.1.S1_at10/117+19327032..19330212Protein kinase domain containing protein, expressed
LOC_Os07g32480OsAffx.15494.1.S1_at6/117+19327032..19330212Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0012505cellular_componentendomembrane system
GO:0030276molecular_functionclathrin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18357.1.S1_at--454--2331Chr07:19309270..19309294 (25 bp)
AAAGAGAGAATCTGCACCGCCTACT
LOC_Os07g32460
Os.18357.1.S1_at--1149--2031Chr07:19309248..19309272 (25 bp)
ACTATTCATTCCCATAAGCGTGCTG
LOC_Os07g32460
Os.18357.1.S1_at--1011--2671Chr07:19309233..19309257 (25 bp)
AAGCGTGCTGAGAAGGCCCAGTACT
LOC_Os07g32460
Os.18357.1.S1_at--490--3631Chr07:19309125..19309230 (25 bp)
CTTGCTGAGGCGGTGCATAACTTCA
LOC_Os07g32460
Os.18357.1.S1_at--567--771Chr07:19308682..19309082 (25 bp)
ATGTCGTTGTTCGTCAGATTGCTCC
LOC_Os07g32460
Os.18357.1.S1_at--896--6331Chr07:19308666..19308690 (25 bp)
GATTGCTCCGAATGGTTGGGCCGAA
LOC_Os07g32460
Os.18357.1.S1_at--366--2271Chr07:19308569..19308593 (25 bp)
AAAGTCTTCCCGCAAGCATAAACCG
LOC_Os07g32460
Os.18357.1.S1_at--50--10111Chr07:19308454..19308478 (25 bp)
TAGGCCGTATGACTGGTATGTTCTT
LOC_Os07g32460
Os.18357.1.S1_at--1108--6911Chr07:19308439..19308463 (25 bp)
GTATGTTCTTTGTTCTACCTTGTAC
LOC_Os07g32460
Os.18357.1.S1_at--114--10191Chr07:19308391..19308415 (25 bp)
TATACATGTTTTCCTGGCAGCAGAT
LOC_Os07g32460
Os.18357.1.S1_at--449--5711Chr07:19308357..19308381 (25 bp)
GACTAAAAGCTTTGGCCATTCATGA
LOC_Os07g32460
Target Sequence 
AAAGAGAGAATCTGCACCGCCTACTATTCATTCCCATAAGCGTGCTGAGAAGGCCCAGTACTTCCTTGCTGAGGCGGTGC
ATAACTTCAATGGTACCACAGAAAAGGAGTTGAGTTTAATTGTTGGTGATTATGTCGTTGTTCGTCAGATTGCTCCGAAT
GGTTGGGCCGAAGGAGAATGCAAGGGGGTGGCAGGATGGTTCCCGGCTGCCTACGTGGAGAGGCGTGAAAATATCCCGCC
AAACAAAGTCTTCCCGCAAGCATAAACCGCCAAATGCTAGTTGAAAATCTAGATTTGCGCTGCTAAAATCTGTAATTTGG
TTTGGGACTGCCATGATTTTTGGTCCTTTTGGAGTTGTTTAGGCCGTATGACTGGTATGTTCTTTGTTCTACCTTGTACA
TGTTTTAGTAACTTGTGATCAGTATACATGTTTTCCTGGCAGCAGATTAGACAGTAGACTAAAAGCTTTGGCCATTCATG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18357.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis