Browse Element(s) Details


OsAffx.15494.1.S1_at

Description tigr:9635.m03191
TID=OsAffx.15494.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g324806/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32450Os.5852.1.S1_at11/117+19303122..19307775transglutaminase, putative, expressed
LOC_Os07g32460Os.18357.1.S1_at11/117+19308275..19313784SH3 domain-containing protein 3, putative, expressed
LOC_Os07g32470OsAffx.28711.1.S1_x_at11/117+19321824..19322354hypothetical protein
LOC_Os07g32470OsAffx.28711.1.S1_at11/117+19321824..19322354hypothetical protein
LOC_Os07g32480OsAffx.15494.1.S1_x_at10/117+19327032..19330212Protein kinase domain containing protein, expressed
LOC_Os07g32480Os.24858.1.S1_at10/117+19327032..19330212Protein kinase domain containing protein, expressed
LOC_Os07g32480OsAffx.15494.1.S1_at6/117+19327032..19330212Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15494.1.S1_at--336--8771NONE
TGTTTGCTACCCAAGCATGTTGTGG
NONE
OsAffx.15494.1.S1_at--708--6851NONE
GTTTGCTACCCAAGCATGTTGTGGA
NONE
OsAffx.15494.1.S1_at--212--9091NONE
TGCTACCCAAGCATGTTGTGGAGAA
NONE
OsAffx.15494.1.S1_at--727--9951NONE
TACCCAAGCATGTTGTGGAGAAATC
NONE
OsAffx.15494.1.S1_at--1058--4371NONE
CCAAGCATGTTGTGGAGAAATCACA
NONE
OsAffx.15494.1.S1_at--928--3051Chr07:19329156..19329176 (21 bp)
AATCAGGATTCCCATTCCAGGGGCT
LOC_Os07g32480
OsAffx.15494.1.S1_at--174--5711Chr07:19329244..19329268 (25 bp)
GACTGCCGAACCTCCGGGTTCAGCT
LOC_Os07g32480
OsAffx.15494.1.S1_at--890--5431Chr07:19329251..19329275 (25 bp)
GAACCTCCGGGTTCAGCTGCGTCGA
LOC_Os07g32480
OsAffx.15494.1.S1_at--874--1751Chr07:19329253..19329277 (25 bp)
ACCTCCGGGTTCAGCTGCGTCGAGA
LOC_Os07g32480
OsAffx.15494.1.S1_at--989--9271Chr07:19329256..19329280 (25 bp)
TCCGGGTTCAGCTGCGTCGAGATGC
LOC_Os07g32480
OsAffx.15494.1.S1_at--949--4251Chr07:19329257..19329281 (25 bp)
CCGGGTTCAGCTGCGTCGAGATGCA
LOC_Os07g32480
Target Sequence 
TGTTTGCTACCCAAGCATGTTGTGGAGAAATCACAGACGAAACCTTCAAAGGCGAGACAAGATCCGAGCGGAATCAGGAT
TCCCATTCCAGGGGCTCTGCCTTGTTGACTGGGGCCGTGGCATCGACCTGAACCTCTTCCCATCCGGTGCGGAGTTCTAC
GGCGACTGCCGAACCTCCGGGTTCAGCTGCGTCGAGATGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15494.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis