Browse Element(s) Details


Os.32948.1.S1_at

Description gb:AK102283.1
DB_XREF= gi:32987492
TID=Os.32948.1
CNT=32
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.32948 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033089G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033089G08, full insert sequence.
FL= gb:AK102283.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3242011/11Bromodomain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32390Os.24598.1.S1_at11/117+19251206..19256295Targeting protein for Xklp2 containing protein, expressed
LOC_Os07g32400Os.18593.2.S1_a_at11/117+19257047..19266589GCK-like kinase MIK, putative, expressed
LOC_Os07g32406OsAffx.28710.1.S1_x_at11/117+19270086..19274491calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32406Os.53897.1.S1_at11/117+19270086..19274491calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32412Os.9035.1.S1_at11/117+19274830..19279826calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32420Os.32948.1.S1_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.32948.1.S1_s_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.23172.1.S1_x_at1/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32430Os.14760.1.S1_at11/117+19289201..19297400Pre-mRNA splicing factor ATP-dependent RNA helicase PRP16, putative, expressed
LOC_Os07g32440NANA7+19300209..19300864hypothetical protein
LOC_Os07g32450Os.5852.1.S1_at11/117+19303122..19307775transglutaminase, putative, expressed
LOC_Os07g32460Os.18357.1.S1_at11/117+19308275..19313784SH3 domain-containing protein 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32948.1.S1_at--447--10231Chr07:19287498..19287522 (25 bp)
TATTGTTGATTTTGTCGACGGGATC
LOC_Os07g32420
Os.32948.1.S1_at--851--31Chr07:19287499..19287523 (25 bp)
ATTGTTGATTTTGTCGACGGGATCG
LOC_Os07g32420
Os.32948.1.S1_at--237--10791Chr07:19287500..19287524 (25 bp)
TTGTTGATTTTGTCGACGGGATCGA
LOC_Os07g32420
Os.32948.1.S1_at--667--8811Chr07:19287501..19287525 (25 bp)
TGTTGATTTTGTCGACGGGATCGAT
LOC_Os07g32420
Os.32948.1.S1_at--712--6631Chr07:19287502..19287526 (25 bp)
GTTGATTTTGTCGACGGGATCGATC
LOC_Os07g32420
Os.32948.1.S1_at--990--10771Chr07:19287503..19287527 (25 bp)
TTGATTTTGTCGACGGGATCGATCT
LOC_Os07g32420
Os.32948.1.S1_at--624--8831Chr07:19287504..19287528 (25 bp)
TGATTTTGTCGACGGGATCGATCTA
LOC_Os07g32420
Os.32948.1.S1_at--761--10371Chr07:19287507..19287531 (25 bp)
TTTTGTCGACGGGATCGATCTACCA
LOC_Os07g32420
Os.32948.1.S1_at--931--10251Chr07:19287508..19287532 (25 bp)
TTTGTCGACGGGATCGATCTACCAC
LOC_Os07g32420
Os.32948.1.S1_at--629--10811Chr07:19287509..19287533 (25 bp)
TTGTCGACGGGATCGATCTACCACC
LOC_Os07g32420
Os.32948.1.S1_at--849--8711Chr07:19287510..19287534 (25 bp)
TGTCGACGGGATCGATCTACCACCT
LOC_Os07g32420
Target Sequence 
TATTGTTGATTTTGTCGACGGGATCGATCTACCACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32948.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis