Browse Element(s) Details


OsAffx.28710.1.S1_x_at

Description tigr:9635.m03184
TID=OsAffx.28710.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3240611/11calcineurin-like phosphoesterase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32380Os.18231.1.S1_at10/117+19241871..19245762Protein phosphatase 2C containing protein, expressed
LOC_Os07g32380Os.49161.1.S1_at1/117+19241871..19245762Protein phosphatase 2C containing protein, expressed
LOC_Os07g32390Os.24598.1.S1_at11/117+19251206..19256295Targeting protein for Xklp2 containing protein, expressed
LOC_Os07g32400Os.18593.2.S1_a_at11/117+19257047..19266589GCK-like kinase MIK, putative, expressed
LOC_Os07g32406OsAffx.28710.1.S1_x_at11/117+19270086..19274491calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32406Os.53897.1.S1_at11/117+19270086..19274491calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32412Os.9035.1.S1_at11/117+19274830..19279826calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32420Os.32948.1.S1_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.32948.1.S1_s_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.23172.1.S1_x_at1/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32430Os.14760.1.S1_at11/117+19289201..19297400Pre-mRNA splicing factor ATP-dependent RNA helicase PRP16, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28710.1.S1_x_at--841--1291Chr07:19271403..19271427 (25 bp)
AGATGTTTTCACTCCGGCGACCATG
LOC_Os07g32406
OsAffx.28710.1.S1_x_at--182--5851Chr07:19271385..19271409 (25 bp)
GACCATGGCGCGAGCTTCCCTTGGG
LOC_Os07g32406
OsAffx.28710.1.S1_x_at--679--8311Chr07:19271365..19271386 (22 bp)
GGCTCAGCCTGATATCCGTGGTGGA
LOC_Os07g32406
OsAffx.28710.1.S1_x_at--496--4011Chr07:19270814..19270838 (25 bp)
CGTCGCGCGGTTTCTGGAGCAACAC
LOC_Os07g32406
OsAffx.28710.1.S1_x_at--164--1631Chr07:19270776..19270800 (25 bp)
AGCTGGCGACGTCCCTGTCCAGGAT
LOC_Os07g32406
OsAffx.28710.1.S1_x_at--37--1011Chr07:19270756..19270780 (25 bp)
AGGATCCGCGGTCTCATCGAGGCCT
LOC_Os07g32406
OsAffx.28710.1.S1_x_at--993--3831Chr07:19270725..19270749 (25 bp)
CTGCTCCGCCGCTTAAGCGAGGCGA
LOC_Os07g32406
OsAffx.28710.1.S1_x_at--811--10491Chr07:19270713..19270737 (25 bp)
TTAAGCGAGGCGACGCCGCGCCACA
LOC_Os07g32406
OsAffx.28710.1.S1_x_at--1041--4171Chr07:19270686..19270710 (25 bp)
CCCAGCCCCAGGTGATCGCGGTGAT
LOC_Os07g32406
OsAffx.28710.1.S1_x_at--1091--7391Chr07:19270666..19270690 (25 bp)
GTGATCCCTCCCCTGGCTGTGATGC
LOC_Os07g32406
OsAffx.28710.1.S1_x_at--477--1632Chr09:14918919..14918938 (20 bp)
AGCGGTCTGATGAGCAGCAGCAGCA
NONE
Target Sequence 
AGATGTTTTCACTCCGGCGACCATGGCGCGAGCTTCCCTTGGGCTCAGCCTGATATCCGTGGTGGAGGGCGTCAGGGAGG
AGCTCCCGACCGTCGCGCGGTTTCTGGAGCAACACCGCCTCCCCGCCGAGCTGGCGACGTCCCTGTCCAGGATCCGCGGT
CTCATCGAGGCCTCCCCTCCTGCTCCGCCGCTTAAGCGAGGCGACGCCGCGCCACAGCCCCAGCCCCAGGTGATCGCGGT
GATCCCTCCCCTGGCTGTGATGCCACCGCGCGAGCAGGAAGCGCCGCATGGCACGGGGGACGCGGAGGCTCCGGGGATCG
TGCGCGGCGACGCCGACGACGACGACGCCGTGCCGCCGAAGGAGCGGTCTGATGAGCAGCAGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28710.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis