Browse Element(s) Details


Os.24598.1.S1_at

Description gb:AK102722.1
DB_XREF= gi:32987931
TID=Os.24598.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24598 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033105H15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033105H15, full insert sequence.
FL= gb:AK102722.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3239011/11Targeting protein for Xklp2 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32340Os.26536.1.S1_at11/117+19222234..19228786retrotransposon protein, putative, unclassified, expressed
LOC_Os07g32350Os.53692.1.S1_at11/117+19229955..19234318WD-repeat protein 74, putative, expressed
LOC_Os07g32360OsAffx.28709.1.S1_at11/117+19236102..19236539hypothetical protein
LOC_Os07g32370OsAffx.16522.1.S1_at11/117+19238179..19239847hypothetical protein
LOC_Os07g32380Os.18231.1.S1_at10/117+19241871..19245762Protein phosphatase 2C containing protein, expressed
LOC_Os07g32380Os.49161.1.S1_at1/117+19241871..19245762Protein phosphatase 2C containing protein, expressed
LOC_Os07g32390Os.24598.1.S1_at11/117+19251206..19256295Targeting protein for Xklp2 containing protein, expressed
LOC_Os07g32400Os.18593.2.S1_a_at11/117+19257047..19266589GCK-like kinase MIK, putative, expressed
LOC_Os07g32406OsAffx.28710.1.S1_x_at11/117+19270086..19274491calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32406Os.53897.1.S1_at11/117+19270086..19274491calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32412Os.9035.1.S1_at11/117+19274830..19279826calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32420Os.32948.1.S1_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.32948.1.S1_s_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.23172.1.S1_x_at1/117+19280056..19288079Bromodomain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24598.1.S1_at--1010--1571Chr07:19251831..19251855 (25 bp)
AGCTCAGGAGGACCTTGGTGCCACA
LOC_Os07g32390
Os.24598.1.S1_at--46--5331Chr07:19251791..19251815 (25 bp)
GAAGTTTGACAGACCATTTCGTCCC
LOC_Os07g32390
Os.24598.1.S1_at--425--171Chr07:19251685..19251800 (25 bp)
ATTTCGTCCCCAGAGATCAACCAAG
LOC_Os07g32390
Os.24598.1.S1_at--133--5311Chr07:19251608..19251632 (25 bp)
GAAGGCACGCCTTCATCAGATGATC
LOC_Os07g32390
Os.24598.1.S1_at--52--431Chr07:19251569..19251593 (25 bp)
ATCTTGTTGTCGTCTATCGGTTACC
LOC_Os07g32390
Os.24598.1.S1_at--414--5071Chr07:19251487..19251511 (25 bp)
GCAGCGATTCTTTCTGACCAATACA
LOC_Os07g32390
Os.24598.1.S1_at--19--3111Chr07:19251460..19251484 (25 bp)
AATAGGCCGATCCAATCCTGTTATA
LOC_Os07g32390
Os.24598.1.S1_at--273--8951Chr07:19251418..19251442 (25 bp)
TGACGGCGTGTGTATGCTCCTTTAG
LOC_Os07g32390
Os.24598.1.S1_at--50--10091Chr07:19251396..19251420 (25 bp)
TAGGGTTCTGCTGATGCTTGACTGC
LOC_Os07g32390
Os.24598.1.S1_at--615--10091Chr07:19251316..19251340 (25 bp)
TAGGATGACACCCTGTCAGTGTCCT
LOC_Os07g32390
Os.24598.1.S1_at--659--10351Chr07:19251250..19251274 (25 bp)
TTTATCATCTCTGAACTATCCTGGA
LOC_Os07g32390
Target Sequence 
AGCTCAGGAGGACCTTGGTGCCACAAGCACGGCCTCTCCCGAAGTTTGACAGACCATTTCGTCCCCAGAGATCAACCAAG
CAGGTGACGAGGCCGANGTCCCCACAGNTTCAGNTCGACCAAAGAGGGNCAAGAAGGCACGCCTTCATCAGATGATCCAA
CTNTCCGGCTCATCTTGTTGTCGTCTATCGGTTACCCACTGGCTGCTGCTGTTTTCTCTTCTGTTCTTGACGTCAAGATC
ATCCCCAATTCTCGCAGCGATTCTTTCTGACCAATACATAAATAGGCCGATCCAATCCTGTTATATAGTCAGTCAACACA
GCTGACGGCGTGTGTATGCTCCTTTAGGGTTCTGCTGATGCTTGACTGCATTATTGTAAATTCAGTTTGTGTGCTGTGTG
TGTGTGCTGTTCGATGAACGACAATAGGATGACACCCTGTCAGTGTCCTCCTCGTCTGTTTCGACGAATGCAAGTTGTAT
TCATTATTTGTTTATCATCTCTGAACTATCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24598.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis