Browse Element(s) Details


Os.26536.1.S1_at

Description gb:AK071089.1
DB_XREF= gi:32981112
TID=Os.26536.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26536 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013135H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079F03, full insert sequence.
FL= gb:AK072171.1 gb:AK071089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3234011/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32300Os.37083.2.S1_at1/117+19208938..19209264retrotransposon protein, putative, unclassified
LOC_Os07g32310NANA7+19209903..19215866retrotransposon protein, putative, unclassified
LOC_Os07g32320Os.28943.1.S1_x_at1/117+19216489..19219708retrotransposon protein, putative, unclassified
LOC_Os07g32330Os.47130.4.A1_x_at1/117+19220646..19220972retrotransposon protein, putative, unclassified
LOC_Os07g32330Os.37083.2.S1_at1/117+19220646..19220972retrotransposon protein, putative, unclassified
LOC_Os07g32340Os.26536.1.S1_at11/117+19222234..19228786retrotransposon protein, putative, unclassified, expressed
LOC_Os07g32350Os.53692.1.S1_at11/117+19229955..19234318WD-repeat protein 74, putative, expressed
LOC_Os07g32360OsAffx.28709.1.S1_at11/117+19236102..19236539hypothetical protein
LOC_Os07g32370OsAffx.16522.1.S1_at11/117+19238179..19239847hypothetical protein
LOC_Os07g32380Os.18231.1.S1_at10/117+19241871..19245762Protein phosphatase 2C containing protein, expressed
LOC_Os07g32380Os.49161.1.S1_at1/117+19241871..19245762Protein phosphatase 2C containing protein, expressed
LOC_Os07g32390Os.24598.1.S1_at11/117+19251206..19256295Targeting protein for Xklp2 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26536.1.S1_at--34--8971Chr07:19228092..19228116 (25 bp)
TGAAAGAGCAATTTACCAGCAGAGC
LOC_Os07g32340
Os.26536.1.S1_at--362--1591Chr07:19228309..19228333 (25 bp)
AGCTCGTGCAGCAGGGAAACTGGCA
LOC_Os07g32340
Os.26536.1.S1_at--314--6551Chr07:19228385..19228409 (25 bp)
GATTTTGATGAGTTTGTCCCCGGAT
LOC_Os07g32340
Os.26536.1.S1_at--412--7811Chr07:19228451..19228475 (25 bp)
GGTCTGAAACTGTTGAACTCTGCAA
LOC_Os07g32340
Os.26536.1.S1_at--827--3291Chr07:19228485..19228509 (25 bp)
CACAATTGGGATGTTTGGCGGTCAA
LOC_Os07g32340
Os.26536.1.S1_at--119--6651Chr07:19228519..19228543 (25 bp)
GTTGTTGCGAGAAGACTGCCATTGT
LOC_Os07g32340
Os.26536.1.S1_at--226--3611Chr07:19228538..19228562 (25 bp)
CATTGTTTTTTGTTCTGGCTGTCAT
LOC_Os07g32340
Os.26536.1.S1_at--691--8331Chr07:19228554..19228578 (25 bp)
GGCTGTCATATGATCACATGGTTGT
LOC_Os07g32340
Os.26536.1.S1_at--835--6051Chr07:19228588..19228612 (25 bp)
GAGATTGCCAGGATCCTTCTGAAGA
LOC_Os07g32340
Os.26536.1.S1_at--410--9291Chr07:19228730..19228754 (25 bp)
TCCCCTTGTACCACTCATGGAAATG
LOC_Os07g32340
Os.26536.1.S1_at--10--171Chr07:19228759..19228783 (25 bp)
ATTTTCTTTTCCTGGCATTAATAGT
LOC_Os07g32340
Target Sequence 
TGAAAGAGCAATTTACCAGCAGAGCTCTTANCCAACCAATGAAACCTATGGCAAGTAAAGAACTTCACATTAAAAAGGAG
AAAGAGCTAGCTCGTGCAGCAGGGAAACTGGCAGACTGCCAGAAGACAATAGCTTCACTGAACAGGCAACTTAAATCGTT
AGCAGATTTTGATGAGTTTGTCCCCGGATTCGAGAACGACAGCGTAATAGCTGAAGGCTGGGAGGAAAATGGTCTGAAAC
TGTTGAACTCTGCAAATTATCCAGCACAATTGGGATGTTTGGCGGTCAAATGATTGCTGTTGTTGCGAGAAGACTGCCAT
TGTTTTTTGTTCTGGCTGTCATATGATCACATGGTTGTTGTGATGAGGAGATTGCCAGGATCCTTCTGAAGATGCTATAT
ATATATGGAGATAAGTTAATNGTTTATAGATAAGCAAAATGTTCATACGGAAACGATGTTAATAAAGTTATTCAAGCCTT
GAAGGGAACTATGTAAAGATTAATTTTGTTCCCCTTGTACCACTCATGGAAATGGGCAATTTTCTTTTCCTGGCATTAAT
AGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26536.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis