Browse Element(s) Details


Os.18231.1.S1_at

Description gb:CB668038
DB_XREF= gi:29671763
DB_XREF=OSJNEd15K23.r
CLONE=OSJNEd15K23
TID=Os.18231.1
CNT=8
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18231 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_567808.1 (A.thaliana) protein phosphatase 2C-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3238010/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32320Os.28943.1.S1_x_at1/117+19216489..19219708retrotransposon protein, putative, unclassified
LOC_Os07g32330Os.47130.4.A1_x_at1/117+19220646..19220972retrotransposon protein, putative, unclassified
LOC_Os07g32330Os.37083.2.S1_at1/117+19220646..19220972retrotransposon protein, putative, unclassified
LOC_Os07g32340Os.26536.1.S1_at11/117+19222234..19228786retrotransposon protein, putative, unclassified, expressed
LOC_Os07g32350Os.53692.1.S1_at11/117+19229955..19234318WD-repeat protein 74, putative, expressed
LOC_Os07g32360OsAffx.28709.1.S1_at11/117+19236102..19236539hypothetical protein
LOC_Os07g32370OsAffx.16522.1.S1_at11/117+19238179..19239847hypothetical protein
LOC_Os07g32380Os.18231.1.S1_at10/117+19241871..19245762Protein phosphatase 2C containing protein, expressed
LOC_Os07g32380Os.49161.1.S1_at1/117+19241871..19245762Protein phosphatase 2C containing protein, expressed
LOC_Os07g32390Os.24598.1.S1_at11/117+19251206..19256295Targeting protein for Xklp2 containing protein, expressed
LOC_Os07g32400Os.18593.2.S1_a_at11/117+19257047..19266589GCK-like kinase MIK, putative, expressed
LOC_Os07g32406OsAffx.28710.1.S1_x_at11/117+19270086..19274491calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32406Os.53897.1.S1_at11/117+19270086..19274491calcineurin-like phosphoesterase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18231.1.S1_at--324--2411Chr07:19243585..19243609 (25 bp)
AAACAGCTTTCGGTTGATCATGAAC
LOC_Os07g32380
Os.18231.1.S1_at--948--2211Chr07:19243557..19243581 (25 bp)
ACAAGGAGCGGCATTCAATCGAGAA
LOC_Os07g32380
Os.18231.1.S1_at--108--2531Chr07:19243083..19243537 (25 bp)
AACTTACCAGGAGATGTACCGCGTG
LOC_Os07g32380
Os.18231.1.S1_at--856--8751Chr07:19243069..19243093 (25 bp)
TGTACCGCGTGTTGATGGTCAGCTT
LOC_Os07g32380
Os.18231.1.S1_at--525--7111Chr07:19243052..19243076 (25 bp)
GTCAGCTTGCGGTTGCAAGGGCATT
LOC_Os07g32380
Os.18231.1.S1_at--258--7591Chr07:19243034..19243058 (25 bp)
GGGCATTTGGAGACCGGAGCCTAAA
LOC_Os07g32380
Os.18231.1.S1_at--438--5991Chr07:19243025..19243049 (25 bp)
GAGACCGGAGCCTAAAGAAGCACCT
LOC_Os07g32380
Os.18231.1.S1_at--644--1451Chr07:19243010..19243034 (25 bp)
AGAAGCACCTCAGCTCAGAGCCAGA
LOC_Os07g32380
Os.18231.1.S1_at--99--331Chr07:19242959..19242983 (25 bp)
ATACTGATTTTCTAATTCTTGCAAG
LOC_Os07g32380
Os.18231.1.S1_at--725--5931Chr07:19241912..19241936 (25 bp)
GAGCAGGCCGTGAACCGGAAAAGCA
LOC_Os07g32380
Os.18231.1.S1_at--1153--2391Chr07:19241843..19241867 (25 bp)
AAACAGAGTCTCATACAAGTGTACA
NONE
Target Sequence 
AAACAGCTTTCGGTTGATCATGAACCAAACAAGGAGCGGCATTCAATCGAGAAAAAAGGTGGCTTTGTTTCAAACTTACC
AGGAGATGTACCGCGTGTTGATGGTCAGCTTGCGGTTGCAAGGGCATTTGGAGACCGGAGCCTAAAGAAGCACCTCAGCT
CAGAGCCAGATGTGGTGGAGGAACCTATAGACGAGAATACTGATTTTCTAATTCTTGCAAGTGATGGATTATGGAAGGTG
ATGTCCAACCAAGAGGCGGTGGATGAAATCAAGGACTTCAAGGATGCTCAGGCAGCTGCGAAGCATCTNACGGAGCAGGC
CGTGAACCGGAAAAGCAAAGACGACATCTCCTGCATCGTTGTAAAATTCCTCTGCTAGCAGAAACAGAGTCTCATACAAG
TGTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18231.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis