Browse Element(s) Details


OsAffx.28709.1.S1_at

Description tigr:9635.m03179
TID=OsAffx.28709.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3236011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32310NANA7+19209903..19215866retrotransposon protein, putative, unclassified
LOC_Os07g32320Os.28943.1.S1_x_at1/117+19216489..19219708retrotransposon protein, putative, unclassified
LOC_Os07g32330Os.47130.4.A1_x_at1/117+19220646..19220972retrotransposon protein, putative, unclassified
LOC_Os07g32330Os.37083.2.S1_at1/117+19220646..19220972retrotransposon protein, putative, unclassified
LOC_Os07g32340Os.26536.1.S1_at11/117+19222234..19228786retrotransposon protein, putative, unclassified, expressed
LOC_Os07g32350Os.53692.1.S1_at11/117+19229955..19234318WD-repeat protein 74, putative, expressed
LOC_Os07g32360OsAffx.28709.1.S1_at11/117+19236102..19236539hypothetical protein
LOC_Os07g32370OsAffx.16522.1.S1_at11/117+19238179..19239847hypothetical protein
LOC_Os07g32380Os.18231.1.S1_at10/117+19241871..19245762Protein phosphatase 2C containing protein, expressed
LOC_Os07g32380Os.49161.1.S1_at1/117+19241871..19245762Protein phosphatase 2C containing protein, expressed
LOC_Os07g32390Os.24598.1.S1_at11/117+19251206..19256295Targeting protein for Xklp2 containing protein, expressed
LOC_Os07g32400Os.18593.2.S1_a_at11/117+19257047..19266589GCK-like kinase MIK, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28709.1.S1_at--423--2691Chr07:19236466..19236490 (25 bp)
AAGCTGTCAGCCTTACTACAACAAG
LOC_Os07g32360
OsAffx.28709.1.S1_at--920--3271Chr07:19236448..19236472 (25 bp)
CAACAAGCACCACAGAACATTCCAA
LOC_Os07g32360
OsAffx.28709.1.S1_at--101--5491Chr07:19236434..19236458 (25 bp)
GAACATTCCAAGAGCAACCAATCAA
LOC_Os07g32360
OsAffx.28709.1.S1_at--591--2291Chr07:19236291..19236315 (25 bp)
AAAGGCCAAGGTTTCAACAGCTCAG
LOC_Os07g32360
OsAffx.28709.1.S1_at--322--2491Chr07:19236276..19236300 (25 bp)
AACAGCTCAGGGTGGATCTGCTAGA
LOC_Os07g32360
OsAffx.28709.1.S1_at--618--6411Chr07:19236248..19236272 (25 bp)
GATCTTCAAGCAATAGTTCCCCATT
LOC_Os07g32360
OsAffx.28709.1.S1_at--700--271Chr07:19236236..19236260 (25 bp)
ATAGTTCCCCATTCAAACAGCTCTA
LOC_Os07g32360
OsAffx.28709.1.S1_at--755--9531Chr07:19236215..19236239 (25 bp)
TCTACTACTGCGTCTGTGAGGCTCA
LOC_Os07g32360
OsAffx.28709.1.S1_at--581--7391Chr07:19236200..19236224 (25 bp)
GTGAGGCTCACATCTGGCAAGGCAA
LOC_Os07g32360
OsAffx.28709.1.S1_at--915--8491Chr07:19236186..19236210 (25 bp)
TGGCAAGGCAACTGTCACTGTCTCA
LOC_Os07g32360
OsAffx.28709.1.S1_at--1041--7091Chr07:19236173..19236197 (25 bp)
GTCACTGTCTCAGCTCAAGAGCCTA
LOC_Os07g32360
Target Sequence 
AAGCTGTCAGCCTTACTACAACAAGCACCACAGAACATTCCAAGAGCAACCAATCAAAGAGCAAGGCAGCAATGGATAGC
CAGGAAGTGGTCAGGGTTGCTGCAAAGGCCAAGGTTTCAACAGCTCAGGGTGGATCTGCTAGAGTAGATCTTCAAGCAAT
AGTTCCCCATTCAAACAGCTCTACTACTGCGTCTGTGAGGCTCACATCTGGCAAGGCAACTGTCACTGTCTCAGCTCAAG
AGCCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28709.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis