Browse Element(s) Details


Os.14760.1.S1_at

Description gb:AK073417.1
DB_XREF= gi:32983440
TID=Os.14760.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.14760 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033041J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033041J24, full insert sequence.
FL= gb:AK073417.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3243011/11Pre-mRNA splicing factor ATP-dependent RNA helicase PRP16, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g32400Os.18593.2.S1_a_at11/117+19257047..19266589GCK-like kinase MIK, putative, expressed
LOC_Os07g32406OsAffx.28710.1.S1_x_at11/117+19270086..19274491calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32406Os.53897.1.S1_at11/117+19270086..19274491calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32412Os.9035.1.S1_at11/117+19274830..19279826calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os07g32420Os.32948.1.S1_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.32948.1.S1_s_at11/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32420Os.23172.1.S1_x_at1/117+19280056..19288079Bromodomain containing protein, expressed
LOC_Os07g32430Os.14760.1.S1_at11/117+19289201..19297400Pre-mRNA splicing factor ATP-dependent RNA helicase PRP16, putative, expressed
LOC_Os07g32440NANA7+19300209..19300864hypothetical protein
LOC_Os07g32450Os.5852.1.S1_at11/117+19303122..19307775transglutaminase, putative, expressed
LOC_Os07g32460Os.18357.1.S1_at11/117+19308275..19313784SH3 domain-containing protein 3, putative, expressed
LOC_Os07g32470OsAffx.28711.1.S1_x_at11/117+19321824..19322354hypothetical protein
LOC_Os07g32470OsAffx.28711.1.S1_at11/117+19321824..19322354hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
GO:0003724molecular_functionRNA helicase activity
GO:0004004molecular_functionATP-dependent RNA helicase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14760.1.S1_at--1108--4231Chr07:19289487..19289511 (25 bp)
CCGGGCTTGAAGAAAGGCTCGACAT
LOC_Os07g32430
Os.14760.1.S1_at--46--2951Chr07:19289474..19289498 (25 bp)
AAGGCTCGACATACTTGAGGCCCAA
LOC_Os07g32430
Os.14760.1.S1_at--462--171Chr07:19289397..19289421 (25 bp)
ATTTTGTTATATCGAGGGCTCTTGT
LOC_Os07g32430
Os.14760.1.S1_at--545--6131Chr07:19289384..19289408 (25 bp)
GAGGGCTCTTGTACAAATACAGCTA
LOC_Os07g32430
Os.14760.1.S1_at--196--3091Chr07:19289369..19289393 (25 bp)
AATACAGCTACGCTGACTCCTGAGC
LOC_Os07g32430
Os.14760.1.S1_at--717--4751Chr07:19289358..19289382 (25 bp)
GCTGACTCCTGAGCTATTGTAGTAT
LOC_Os07g32430
Os.14760.1.S1_at--912--31Chr07:19289343..19289367 (25 bp)
ATTGTAGTATGTACCATTCTGCATG
LOC_Os07g32430
Os.14760.1.S1_at--1107--6971Chr07:19289333..19289357 (25 bp)
GTACCATTCTGCATGTATAACACAT
LOC_Os07g32430
Os.14760.1.S1_at--791--8551Chr07:19289309..19289333 (25 bp)
TGGATGAATGTAACGATTACGCCAC
LOC_Os07g32430
Os.14760.1.S1_at--867--6651Chr07:19289238..19289263 (25 bp)
GTTGAAACGAAGACTGTATCCTTGT
LOC_Os07g32430
Os.14760.1.S1_at--668--10071Chr07:19289212..19289236 (25 bp)
TATGGTTCTTTTGCGTTGTTAAAAT
LOC_Os07g32430
Target Sequence 
CCGGGCTTGAAGAAAGGCTCGACATACTTGAGGCCCAAAAGGATGGGTCTATAGATGAGAAAACTTGATGAAAGTATTCA
ATGTACTGTGATTTTGTTATATCGAGGGCTCTTGTACAAATACAGCTACGCTGACTCCTGAGCTATTGTAGTATGTACCA
TTCTGCATGTATAACACATGGATGAATGTAACGATTACGCCACNNNNGGNAANNNNNNNNNNNNNNNNTGATNNTNGTCN
TNTGNNNNGTNNNNANNNNNNNNNTNATCCTTGTNTNNNGTNNTGTTGAAACGAAGACTGTATCCTTGTTTATGGTTCTT
TTGCGTTGTTAAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis