Browse Element(s) Details


Os.24863.1.A1_at

Description gb:CA762900
DB_XREF= gi:25806939
DB_XREF=BR060011B10D02.ab1
CLONE=BR060011B10D02.ab1
TID=Os.24863.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.24863 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_173005.1 (A.thaliana) ABC transporter, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g163803/11ABC1 protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16340NANA9+9989624..9990765retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16350Os.27691.1.S1_x_at1/119+9991016..9994306retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16360NANA9+9994379..9995581retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16370NANA9+10002548..10004233hypothetical protein
LOC_Os09g16380Os.24863.1.A1_at3/119+10007837..10020831ABC1 protein, putative
LOC_Os09g16380Os.55739.1.S1_x_at2/119+10007837..10020831ABC1 protein, putative
LOC_Os09g16380OsAffx.22564.2.S1_at1/119+10007837..10020831ABC1 protein, putative
LOC_Os09g16390OsAffx.29873.1.S1_at11/119+10022366..10022878hypothetical protein
LOC_Os09g16400NANA9+10027296..10030371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16410OsAffx.17740.1.S1_at11/119+10038307..10038856hypothetical protein
LOC_Os09g16420NANA9+10041143..10041733retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.1.S1_x_at5/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.2.S1_x_at4/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.3.S1_x_at4/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.5.S1_x_at2/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0015692biological_processlead ion transport
GO:0005886cellular_componentplasma membrane
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24863.1.A1_at--761--251NONE
ATACCATGTGGAACCTTTTTTCAGG
NONE
Os.24863.1.A1_at--1118--7051NONE
GTAATGCCGGTAACTAGAATTCCTA
NONE
Os.24863.1.A1_at--561--5631NONE
GACACTCAATGGGTTGGTTCCCTCA
NONE
Os.24863.1.A1_at--1133--671NONE
ATGACGGAGAGCGTGTATCTGACTT
NONE
Os.24863.1.A1_at--838--5471Chr09:10007936..10007960 (25 bp)
GAACTACTTTGGTTTCCATCATGAG
LOC_Os09g16380
Os.24863.1.A1_at--929--411NONE
ATCATGAGTTATTGTGGGTCCCCGC
NONE
Os.24863.1.A1_at--465--8611NONE
TGGGTCCCCGCTATGGTAGTTGTCT
NONE
Os.24863.1.A1_at--362--6951Chr09:10007890..10007914 (25 bp)
GTAGTTGTCTCATTTGCTGTTCTTT
LOC_Os09g16380
Os.24863.1.A1_at--267--211Chr09:10007879..10007903 (25 bp)
ATTTGCTGTTCTTTTTGCCTTCCTT
LOC_Os09g16380
Os.24863.1.A1_at--199--991Chr09:10007749..10007773 (25 bp)
AGGAGGTACCTGCAATAGTTTTATG
NONE
Os.24863.1.A1_at--524--6931Chr09:10007720..10007744 (25 bp)
GTAGGTTGTCAGTCATGCAGGTTGT
NONE
Target Sequence 
ATACCATGTGGAACCTTTTTTCAGGATTTGTAATGCCGGTAACTAGAATTCCTATATGGTGGAGATGGTGCTATTGGATT
TGCCCGGTTGCATGGACACTCAATGGGTTGGTTCCCTCACAGTTTGGGGATGTATCAACCAAGTTTTATGACGGAGAGCG
TGTATCTGACTTTGTCAAGAACTACTTTGGTTTCCATCATGAGTTATTGTGGGTCCCCGCTATGGTAGTTGTCTCATTTG
CTGTTCTTTTTGCCTTCCTTTTTGGACTCTCACTCAGGCTATTCAATTTCCAAAAGCGATAACTAACAAAGGCATACCTG
AGTTTCAGAGTTTTAACAGAGCCTGGTTAGCAGAAATGTTACTATAGGAGGTACCTGCAATAGTTTTATGGTATGTAGGT
TGTCAGTCATGCAGGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24863.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis