Browse Element(s) Details


OsAffx.29873.1.S1_at

Description tigr:9637.m01372
TID=OsAffx.29873.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1639011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16370NANA9+10002548..10004233hypothetical protein
LOC_Os09g16380Os.24863.1.A1_at3/119+10007837..10020831ABC1 protein, putative
LOC_Os09g16380Os.55739.1.S1_x_at2/119+10007837..10020831ABC1 protein, putative
LOC_Os09g16380OsAffx.22564.2.S1_at1/119+10007837..10020831ABC1 protein, putative
LOC_Os09g16390OsAffx.29873.1.S1_at11/119+10022366..10022878hypothetical protein
LOC_Os09g16400NANA9+10027296..10030371transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g16410OsAffx.17740.1.S1_at11/119+10038307..10038856hypothetical protein
LOC_Os09g16420NANA9+10041143..10041733retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.1.S1_x_at5/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.2.S1_x_at4/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.3.S1_x_at4/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g16430OsAffx.22947.5.S1_x_at2/119+10042019..10048364retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29873.1.S1_at--555--7551Chr09:10022475..10022499 (25 bp)
GTGGCCGGATCTGCCACCCTGATGA
LOC_Os09g16390
OsAffx.29873.1.S1_at--1--4251Chr09:10022479..10022503 (25 bp)
CCGGATCTGCCACCCTGATGACGGG
LOC_Os09g16390
OsAffx.29873.1.S1_at--14--3991Chr09:10022597..10022621 (25 bp)
CGGGATCCGCTAGCTGCCGTGATGA
LOC_Os09g16390
OsAffx.29873.1.S1_at--1144--8631Chr09:10022664..10022688 (25 bp)
TGGGCGCGGATCTGACGGCGTCGGT
LOC_Os09g16390
OsAffx.29873.1.S1_at--949--8331Chr09:10022694..10022718 (25 bp)
GGCGGCCCTCCTTGGCGGTGAAGGA
LOC_Os09g16390
OsAffx.29873.1.S1_at--817--8351Chr09:10022731..10022755 (25 bp)
GGCGGCTGGCACAACGACGACAGCT
LOC_Os09g16390
OsAffx.29873.1.S1_at--180--8351Chr09:10022734..10022758 (25 bp)
GGCTGGCACAACGACGACAGCTGCT
LOC_Os09g16390
OsAffx.29873.1.S1_at--452--5791Chr09:10022746..10022770 (25 bp)
GACGACAGCTGCTCCCGTGATGACA
LOC_Os09g16390
OsAffx.29873.1.S1_at--876--2151Chr09:10022750..10022774 (25 bp)
ACAGCTGCTCCCGTGATGACAATGA
LOC_Os09g16390
OsAffx.29873.1.S1_at--306--4771Chr09:10022753..10022777 (25 bp)
GCTGCTCCCGTGATGACAATGACGG
LOC_Os09g16390
OsAffx.29873.1.S1_at--629--5751Chr09:10022773..10022797 (25 bp)
GACGGTTACCGTGATGATGATGACA
LOC_Os09g16390
Target Sequence 
GTGGCCGGATCTGCCACCCTGATGACGGGGGAGACCGGATCCACCGCCGTGACGACGGTGGAGGTTGGATCCGCCACCGC
GACGACGTGGAGGCCGGATCCGCCGCCGCGACGACGGGGAGGCGGGATCCGCTAGCTGCCGTGATGACGGGGGAGGCCAA
CAGGGAGGGCGGCGATGGTGGCGGGAGGGTGGGCGCGGATCTGACGGCGTCGGTGCTTGGGCGGCCCTCCTTGGCGGTGA
AGGAGGTGGATCCGGCGGCGGCTGGCACAACGACGACAGCTGCTCCCGTGATGACAATGACGGTTACCGTGATGATGATG
ACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29873.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis