Browse Element(s) Details


Os.24870.1.S1_at

Description gb:AK070098.1
DB_XREF= gi:32980122
TID=Os.24870.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24870 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative ATP-dependent Clp protease regulatory subunit CLPX (P0434C04.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023040F17, full insert sequence.
FL= gb:AK070098.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6633011/11ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g66290Os.28021.1.S1_a_at11/111+38827729..38831915Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os01g66300Os.28114.1.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed
LOC_Os01g66300Os.28114.2.S1_at11/111+38835972..38840318KH domain-containing quaking protein, putative, expressed
LOC_Os01g66310Os.47751.1.A1_at6/111+38843266..38843686expressed protein
LOC_Os01g66320OsAffx.21814.1.A1_at9/111+38844351..38847071expressed protein
LOC_Os01g66330Os.24870.1.S1_s_at11/111+38847481..38853236ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
LOC_Os01g66330Os.24870.1.S1_at11/111+38847481..38853236ATP-dependent Clp protease ATP-binding subunit ClpX1, putative, expressed
LOC_Os01g66340OsAffx.21813.1.S1_at3/111+38854810..38855034hypothetical protein
LOC_Os01g66350Os.8506.1.S1_at11/111+38861672..38867180expressed protein
LOC_Os01g66350Os.51330.1.S1_at1/111+38861672..38867180expressed protein
LOC_Os01g66360NANA1+38868667..388724822-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, chloroplast precursor, putative, expressed
LOC_Os01g66379Os.6029.1.S1_at11/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.54153.1.S1_at1/111+38872616..38885230peptide chain release factor, putative, expressed
LOC_Os01g66379Os.13704.1.S1_x_at1/111+38872616..38885230peptide chain release factor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24870.1.S1_at--273--5931Chr01:38848151..38848175 (25 bp)
GAGCAGTACATAACAAACACTAACA
LOC_Os01g66330
Os.24870.1.S1_at--709--3231Chr01:38847623..38847647 (25 bp)
CAACTGGGCAGTTTAGTTATTGGCA
LOC_Os01g66330
Os.24870.1.S1_at--316--3891Chr01:38847620..38847644 (25 bp)
CTGGGCAGTTTAGTTATTGGCAAAA
LOC_Os01g66330
Os.24870.1.S1_at--533--11Chr01:38847604..38847628 (25 bp)
TTGGCAAAAGTATAAAGAATCCTAC
LOC_Os01g66330
Os.24870.1.S1_at--795--5251Chr01:38847588..38847612 (25 bp)
GAATCCTACATACCATTGTTTCCTA
LOC_Os01g66330
Os.24870.1.S1_at--485--2091Chr01:38847581..38847605 (25 bp)
ACATACCATTGTTTCCTAGTACATG
LOC_Os01g66330
Os.24870.1.S1_at--696--1731Chr01:38847577..38847601 (25 bp)
ACCATTGTTTCCTAGTACATGATAT
LOC_Os01g66330
Os.24870.1.S1_at--414--51Chr01:38847574..38847598 (25 bp)
ATTGTTTCCTAGTACATGATATGGT
LOC_Os01g66330
Os.24870.1.S1_at--973--6491Chr01:38847557..38847581 (25 bp)
GATATGGTGCCATTTTCCTGACATG
LOC_Os01g66330
Os.24870.1.S1_at--260--10111Chr01:38847555..38847579 (25 bp)
TATGGTGCCATTTTCCTGACATGAT
LOC_Os01g66330
Os.24870.1.S1_at--291--9251Chr01:38847542..38847566 (25 bp)
TCCTGACATGATAAGCCATCAACTG
LOC_Os01g66330
Target Sequence 
GAGCAGTACATAACAAACACTAACATGAAGAATTCCATGGAAGCTAACGAGGGTTTGGCGGGTGAACTTGAAGATGCATA
TATGATGTCAAGATTTGTTAGCTTGTAATTAATTTGACCAACTTCATTCAACATGTAACATGGTCTCCCCCTCACTCACA
TNACAGCCGCTTGTTCTCTTACCATTTTTTTCTGTAATTTATTTTTGCTTGTTTTCTGACAAGCAAGTCTATAGCTCAAT
TTGTTGTAATTCATGTAAACAGGAGTTGCTTTTCATTGAGCAACCCTCCTGCAAAGTAAATTTGCCCCTTCTTTTTTTNT
GAAGCCACCAACTGGGCAGTTTAGTTATTGGCAAAAGTATAAAGAATCCTACATACCATTGTTTCCTAGTACATGATATG
GTGCCATTTTCCTGACATGATAAGCCATCAACTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24870.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis