Browse Element(s) Details


Os.24898.1.S1_at

Description gb:AK109786.1
DB_XREF= gi:32994995
TID=Os.24898.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24898 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-147-C12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-147-C12, full insert sequence.
FL= gb:AK109786.1 gb:AK072573.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5566011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55610Os.49676.1.S1_at11/114+32888694..32889312expressed protein
LOC_Os04g55620Os.24947.1.S1_at11/114+32890651..32894259Protein kinase domain containing protein, expressed
LOC_Os04g55630OsAffx.26617.4.S1_x_at11/114+32895479..32897607hypothetical protein
LOC_Os04g55640Os.51193.1.S1_at11/114+32899301..32900629uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os04g55640Os.51193.1.S1_x_at11/114+32899301..32900629uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os04g55650Os.12701.1.S2_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55650Os.12701.1.S1_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55660Os.24898.1.S1_at11/114+32913238..32915183GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g55670OsAffx.26618.1.S1_at11/114+32918005..32921083glycosyltransferase, putative, expressed
LOC_Os04g55670Os.329.1.S1_at10/114+32918005..32921083glycosyltransferase, putative, expressed
LOC_Os04g55680NANA4+32926304..32928135UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g55690Os.27113.1.S1_at11/114+32928371..32930991expressed protein
LOC_Os04g55700Os.52910.1.S1_at11/114+32930954..32934210exonuclease family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24898.1.S1_at--943--7051Chr04:32913731..32913860 (25 bp)
GTCAATCCCGACCAAGGTTCGAAGC
LOC_Os04g55660
Os.24898.1.S1_at--730--1051Chr04:32913703..32913727 (25 bp)
AGGTGTCGAGCCAGTTCGAGCACAA
LOC_Os04g55660
Os.24898.1.S1_at--216--9111Chr04:32913668..32913692 (25 bp)
TGCTGCGAGAGCTTGGACCCGAACG
LOC_Os04g55660
Os.24898.1.S1_at--48--8151Chr04:32913626..32913650 (25 bp)
GGACACGATGGCAAGGACCTGTTCA
LOC_Os04g55660
Os.24898.1.S1_at--95--971Chr04:32913613..32913637 (25 bp)
AGGACCTGTTCAGCGTGTGCAACGA
LOC_Os04g55660
Os.24898.1.S1_at--234--9011Chr04:32913596..32913620 (25 bp)
TGCAACGATCCGGAGAAGTACTTCT
LOC_Os04g55660
Os.24898.1.S1_at--1014--6211Chr04:32913563..32913587 (25 bp)
GATGTGCACCCCACGGAGGCTGGAT
LOC_Os04g55660
Os.24898.1.S1_at--908--51Chr04:32913328..32913352 (25 bp)
ATTGAACATCTCGTTTCGTCAGTCC
LOC_Os04g55660
Os.24898.1.S1_at--951--9391Chr04:32913313..32913337 (25 bp)
TCGTCAGTCCTTTGTTAGTTTATTA
LOC_Os04g55660
Os.24898.1.S1_at--771--8311Chr04:32913276..32913300 (25 bp)
GGCTGGGACTATATCGACCGAACAT
LOC_Os04g55660
Os.24898.1.S1_at--1024--5211Chr04:32913249..32913273 (25 bp)
GAATTTGGCCCACGTATCTGATACT
LOC_Os04g55660
Target Sequence 
GTCAATCCCGACCAAGGTTCGAAGCNCAAGGTGTCGAGCCAGTTCGAGCACAAGATGCAGCCGTGCTGCGAGAGCTTGGA
CCCGAACGGCTTNTGCGGGCAGAAGGGACACGATGGCAAGGACCTGTTCAGCGTGTGCAACGATCCGGAGAAGTACTTCT
ACTGGGACGATGTGCACCCCACGGAGGCTGGATGGAAGGCCGTCATGCAGCAGCTGGAAGGTCCAATCAAGAAATTCCTT
NGAATCAACTAGAAATTGAGATGGGCGTTAATTAGGTTTAGAGTGTTTTGGTTTAGGGTTAATTTTTTACTATCAGTTTG
TGAGAGTTAGTTATATATGTTAGTAAATTAGGTAAAGATCCCGATTGGCTTGATCGGTGGATATTTTGTTTAGCTCGTGT
TTTATTGAACATCTCGTTTCGTCAGTCCTTTGTTAGTTTATTATTATACTAGCTGGGCTGGGACTATATCGACCGAACAT
GTGAATTTGGCCCACGTATCTGATACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24898.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis