Browse Element(s) Details


Os.24911.1.S1_at

Description gb:AK068346.1
DB_XREF= gi:32978364
TID=Os.24911.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.24911 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013148O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013148O22, full insert sequence.
FL= gb:AK068346.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6217010/11Streptomyces cyclase/dehydrase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62100OsAffx.13578.1.S1_at11/113+35128356..35129480Myb-like DNA-binding domain containing protein
LOC_Os03g62110Os.16788.1.S1_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.49772.1.S1_s_at11/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62110Os.57290.1.S1_at10/113+35129728..35136402nicotinate phosphoribosyltransferase, putative, expressed
LOC_Os03g62120OsAffx.13579.1.S1_at11/113+35137617..35140311DnaJ domain containing protein
LOC_Os03g62130OsAffx.13580.1.S1_at11/113+35141491..35142321DnaJ domain containing protein
LOC_Os03g62140OsAffx.3669.1.S1_at11/113+35144660..35145523DnaJ domain containing protein
LOC_Os03g62150OsAffx.13581.1.S1_at11/113+35146476..35147264DnaJ domain containing protein
LOC_Os03g62160Os.7347.1.S1_at11/113+35147432..35150284expressed protein
LOC_Os03g62160Os.17465.1.S1_x_at1/113+35147432..35150284expressed protein
LOC_Os03g62170Os.24911.1.S1_at10/113+35151821..35157202Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os03g62180Os.18773.1.S1_at10/113+35158306..35161738lectin protein kinase family protein, putative, expressed
LOC_Os03g62190Os.14919.1.S1_at6/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190Os.56216.1.S1_at2/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62190OsAffx.29313.1.S1_at1/113+35163898..35169876transposon protein, putative, Mutator sub-class
LOC_Os03g62200Os.52796.2.S1_x_at11/113+35177201..35180884Ammonium transporter 2, putative, expressed
LOC_Os03g62210Os.6602.1.S1_at11/113+35181007..35181853Subtilisin N-terminal Region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24911.1.S1_at--524--1351NONE
AGAGATCAGGCGATTCCAGAAGAAT
NONE
Os.24911.1.S1_at--144--6251Chr03:35155904..35155928 (25 bp)
GATGGACCCTGCTTATATGCCAAGT
LOC_Os03g62170
Os.24911.1.S1_at--390--5771Chr03:35156596..35156620 (25 bp)
GACGTTATGACATTGCTCGGGCGTT
LOC_Os03g62170
Os.24911.1.S1_at--590--8551Chr03:35156633..35156657 (25 bp)
TGGAGTACACGAGGTTTCTCGCCTT
LOC_Os03g62170
Os.24911.1.S1_at--460--10571Chr03:35156656..35156680 (25 bp)
TTCTTTCTCTTGAACTCAGACGACC
LOC_Os03g62170
Os.24911.1.S1_at--1050--2931Chr03:35156712..35156736 (25 bp)
AAGGCTGGATCCTCATATGCCATAA
LOC_Os03g62170
Os.24911.1.S1_at--26--1711Chr03:35156765..35156789 (25 bp)
ACCAAGCGTTTCTCCGGACAAACAG
LOC_Os03g62170
Os.24911.1.S1_at--980--2391Chr03:35156784..35156808 (25 bp)
AAACAGAAATGGCTCCTGAAGCTGA
LOC_Os03g62170
Os.24911.1.S1_at--470--2831Chr03:35156931..35156955 (25 bp)
AAGTTTCTTGCCTACAATACTGGAT
LOC_Os03g62170
Os.24911.1.S1_at--844--2191Chr03:35156957..35156981 (25 bp)
ACAACACTGTAAGTTTTCCACGCAA
LOC_Os03g62170
Os.24911.1.S1_at--179--3271Chr03:35156979..35157003 (25 bp)
CAAAACTCCCCGCTCTGTAAAGTAT
LOC_Os03g62170
Target Sequence 
AGAGATCAGGCGATTCCAGAAGAATTGGGGGATGGACCCTGCTTATATGCCAAGTAGAAAGTCCTTTGAGAGAGCAGGAC
GTTATGACATTGCTCGGGCGTTGGAAAAATGGGGTGGAGTACACGAGGTTTCTCGCCTTCTTTCTCTTGAACTCAGACGA
CCNTAGAAGGCGAGCCAACTCTGATGATGAGAGTAAGGCTGGATCCTCATATGCCATAACAAATAAACACGCAAGCAAGC
CAAACAAACCAAGCGTTTCTCCGGACAAACAGAAATGGCTCCTGAAGCTGAAGGATCTGGATGCTAATTGGATTGAGTAC
TAACTNGGAGGACTTCACTAATACGGNCCTTCAAATTTATCATCTGACTTCAATGAANAAGGATCTGATAATCATGTACA
GATAAAGGTGGGCAAGTTTCTTGCCTACAATACTGGATTACAACACTGTAAGTTTTCCACGCAAAACTCCCCGCTCTGTA
AAGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24911.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis