Browse Element(s) Details


Os.24943.1.S1_at

Description gb:AK073021.1
DB_XREF= gi:32983044
TID=Os.24943.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24943 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150B09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150B09, full insert sequence.
FL= gb:AK073021.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7223011/11zinc finger and C2 domain protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g72190Os.24603.1.A1_at11/111+42188411..42190544expressed protein
LOC_Os01g72200Os.23711.1.S1_x_at11/111+42191468..42193395expressed protein
LOC_Os01g72200Os.23711.1.S1_at10/111+42191468..42193395expressed protein
LOC_Os01g72200Os.15132.1.S1_x_at3/111+42191468..42193395expressed protein
LOC_Os01g72210Os.49448.1.S1_at11/111+42196797..42200759early-responsive to dehydration protein, putative, expressed
LOC_Os01g72220Os.16005.1.S1_at2/111+42201179..42207376WD-repeat protein 33, putative, expressed
LOC_Os01g72230Os.24943.1.S1_at11/111+42209376..42213258zinc finger and C2 domain protein, putative, expressed
LOC_Os01g72240Os.4468.1.S1_at11/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72240Os.14861.2.S1_at1/111+42213916..42217699Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72250Os.3769.1.S1_a_at11/111+42219537..42223089Uridine 5'-monophosphate synthase, putative, expressed
LOC_Os01g72260NANA1+42223488..42225122Cytochrome P450 family protein, expressed
LOC_Os01g72270NANA1+42226851..42228500Cytochrome P450 family protein, expressed
LOC_Os01g72280Os.52785.1.S1_at11/111+42231085..42234298expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005794cellular_componentGolgi apparatus
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005543molecular_functionphospholipid binding
GO:0008060molecular_functionARF GTPase activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24943.1.S1_at--83--3211Chr01:42212664..42212688 (25 bp)
CAAGGCATATGAGACCTCGGTCGTC
LOC_Os01g72230
Os.24943.1.S1_at--581--6471Chr01:42212692..42212716 (25 bp)
GATACGGCACAGCTCAACAGATGGC
LOC_Os01g72230
Os.24943.1.S1_at--860--5651Chr01:42212746..42212770 (25 bp)
GACAGTGCTATCTCCATCATCGATG
LOC_Os01g72230
Os.24943.1.S1_at--260--1051Chr01:42212786..42212810 (25 bp)
AGGTGACCGTCAGGCTTCAGAACGT
LOC_Os01g72230
Os.24943.1.S1_at--688--5571Chr01:42212874..42212898 (25 bp)
GAAATGGGTTGCTCTGACATTCTGA
LOC_Os01g72230
Os.24943.1.S1_at--741--11Chr01:42212924..42212948 (25 bp)
ATTCTTTGCAAACACTTAGGGCTTT
LOC_Os01g72230
Os.24943.1.S1_at--1047--2631Chr01:42212979..42213003 (25 bp)
AACCATGCGTTCAAGGTTTCCATGC
LOC_Os01g72230
Os.24943.1.S1_at--567--6431Chr01:42213070..42213094 (25 bp)
GATCATTCTGGCACAAATCTGCTTG
LOC_Os01g72230
Os.24943.1.S1_at--372--2451Chr01:42213114..42213138 (25 bp)
AAAATCCTAATTTCACACCGTCTCT
LOC_Os01g72230
Os.24943.1.S1_at--66--7171Chr01:42213133..42213157 (25 bp)
GTCTCTTCCTTGTAACCATCTGAAA
LOC_Os01g72230
Os.24943.1.S1_at--815--7291Chr01:42213191..42213215 (25 bp)
GTGCCCATCTCTACAGAACTACATA
LOC_Os01g72230
Target Sequence 
CAAGGCATATGAGACCTCGGTCGTCGCTGATACGGCACAGCTCAACAGATGGCTAGCAAAAGAAGGCATCTGGATCCAAA
AGGACAGTGCTATCTCCATCATCGATGGCAAGGTGAAGCAGGAGGTGACCGTCAGGCTTCAGAACGTCGAGCGTGGCCAT
CTTGAGATGGAGCTCGAGTGTGTCCCGCTCACGCAATAGCTGCGCCTGCAGAAATGGGTTGCTCTGACATTCTGAATTCA
GAACATGGTTACACGAACAAATTCTTTGCAAACACTTAGGGCTTTGTGTGTAATTACTGTGGCAAATTAGAACTCAACCA
TGCGTTCAAGGTTTCCATGCATNAGATGTATCTGTAGAAGTTAGGAAGGAGTACNTGATGTGAGGCGATTTGTCTATTAA
AGTTGAGATCATTCTGGCACAAATCTGCTTGATTTGTAAGCTTGTCTTTTAAAATCCTAATTTCACACCGTCTCTTCCTT
GTAACCATCTGAAATGGCATAATGGTTCAGAACAAAACGGATGTACCGTGCCCATCTCTACAGAACTACATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24943.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis