Browse Element(s) Details


Os.24947.1.S1_at

Description gb:AK059352.1
DB_XREF= gi:32969370
TID=Os.24947.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24947 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004B22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-026-C12, full insert sequence.
FL= gb:AK059352.1 gb:AK119579.1 gb:AK119889.1 gb:AK100096.1 gb:AK120146.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5562011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55570Os.47917.1.S1_at11/114+32861822..32867352expressed protein
LOC_Os04g55580NANA4+32869534..32870176GRF zinc finger family protein
LOC_Os04g55590Os.49747.1.S1_at6/114+32876519..32877398Homeobox domain containing protein, expressed
LOC_Os04g55600Os.23067.1.S1_at11/114+32882540..32883372expressed protein
LOC_Os04g55610Os.49676.1.S1_at11/114+32888694..32889312expressed protein
LOC_Os04g55620Os.24947.1.S1_at11/114+32890651..32894259Protein kinase domain containing protein, expressed
LOC_Os04g55630OsAffx.26617.4.S1_x_at11/114+32895479..32897607hypothetical protein
LOC_Os04g55640Os.51193.1.S1_at11/114+32899301..32900629uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os04g55640Os.51193.1.S1_x_at11/114+32899301..32900629uncharacterized plant-specific domain TIGR01627 family protein, expressed
LOC_Os04g55650Os.12701.1.S2_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55650Os.12701.1.S1_at11/114+32904084..32907919Low-temperature-induced cysteine proteinase precursor, putative, expressed
LOC_Os04g55660Os.24898.1.S1_at11/114+32913238..32915183GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os04g55670OsAffx.26618.1.S1_at11/114+32918005..32921083glycosyltransferase, putative, expressed
LOC_Os04g55670Os.329.1.S1_at10/114+32918005..32921083glycosyltransferase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24947.1.S1_at--869--5451Chr04:32891213..32891237 (25 bp)
GAACGTCTCTCTATGATTGTTGACA
LOC_Os04g55620
Os.24947.1.S1_at--978--5671Chr04:32891192..32891216 (25 bp)
GACATAGCATCTGCCTGTGTTCGAT
LOC_Os04g55620
Os.24947.1.S1_at--1036--8651Chr04:32891177..32891201 (25 bp)
TGTGTTCGATCCTCGCCTGAAAGTC
LOC_Os04g55620
Os.24947.1.S1_at--1083--8951Chr04:32891160..32891184 (25 bp)
TGAAAGTCGGCCAACTGCCTGGCAA
LOC_Os04g55620
Os.24947.1.S1_at--303--1171Chr04:32891059..32891083 (25 bp)
AGTCATGGATGGGTTTATGTCGGCA
LOC_Os04g55620
Os.24947.1.S1_at--568--8951Chr04:32890916..32890940 (25 bp)
TGACTAGTTCGCTTCCAGCTAAGAA
LOC_Os04g55620
Os.24947.1.S1_at--493--1211Chr04:32890852..32890876 (25 bp)
AGTTTCAGCATGCTCTTTGTCTGTT
LOC_Os04g55620
Os.24947.1.S1_at--896--8971Chr04:32890766..32890790 (25 bp)
TGAACATGGCTCCTCTGTGCAGTGA
LOC_Os04g55620
Os.24947.1.S1_at--405--1131Chr04:32890729..32890753 (25 bp)
AGTGCTTGTAATGATATGGCCTTGC
LOC_Os04g55620
Os.24947.1.S1_at--736--2331Chr04:32890696..32890720 (25 bp)
AAAGATCGTACTCGCACTACTACTA
LOC_Os04g55620
Os.24947.1.S1_at--527--9911Chr04:32890666..32890690 (25 bp)
TACTCCTCCTAGTACATGTTGAAGG
LOC_Os04g55620
Target Sequence 
GAACGTCTCTCTATGATTGTTGACATAGCATCTGCCTGTGTTCGATCCTCGCCTGAAAGTCGGCCAACTGCCTGGCAAGT
CCTCAAGATGATTCAGGAAGTGAAGGAAGCAGATACTGCCGGAGACAATGACANGCGATCTTACTAGCAATTNCTAGTCA
TGGATGGGTTTATGTCGGCAGGATTATNTGAATTNTGAAGTGATCCNTTCGATGTTGCATGCATTGATCTGCTCAGAAAA
AAAAAAGCCAGTAGAACAGTTCCTAATGTAGGTGAATGGCTGCGGGGTCATGATCTCTCTGACTAGTTCGCTTCCAGCTA
AGAATTTTAGCATGCTGTAAAATGTTTTCGTGATTTTAAACTTAGTTTCAGCATGCTCTTTGTCTGTTGGTAGTCTTACT
AAAGTAGTACTGGAATACCCAGTGCTTAGAACTNTGAGAACTTATATTTTGAACATGGCTCCTCTGTGCAGTGAGGGTTT
GTTTATAGTGCTTGTAATGATATGGCCTTGCATATCGAAAAAGATCGTACTCGCACTACTACTACCTTGTACTCCTCCTA
GTACATGTTGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24947.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis