Browse Element(s) Details


Os.2500.1.S1_at

Description gb:AU162382
DB_XREF= gi:11025781
DB_XREF=AU162382
CLONE=R0478
TID=Os.2500.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=1
UG=Os.2500 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative cyanase (OSJNBa0079L16.19), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g332708/11Cyanate hydratase, putative, expressed
LOC_Os09g312501/11transposon protein, putative, unclassified
LOC_Os01g148901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g33250Os.2322.1.S1_at10/1110+17119605..17125465CER1 protein, putative, expressed
LOC_Os10g33250Os.2322.2.S1_at10/1110+17119605..17125465CER1 protein, putative, expressed
LOC_Os10g33260OsAffx.18500.1.S1_at11/1110+17127907..17128922hypothetical protein
LOC_Os10g33270Os.54423.1.A1_x_at10/1110+17142228..17145456Cyanate hydratase, putative, expressed
LOC_Os10g33270Os.2500.1.S1_at8/1110+17142228..17145456Cyanate hydratase, putative, expressed
LOC_Os10g33290Os.26837.1.S1_at11/1110+17155334..17161415TPR Domain containing protein, expressed
LOC_Os10g33290Os.26837.1.S2_at10/1110+17155334..17161415TPR Domain containing protein, expressed
LOC_Os10g33300Os.37083.2.S1_at1/1110+17162479..17162805retrotransposon protein, putative, unclassified
LOC_Os10g33304NANA10+17164076..17166851hypothetical protein
LOC_Os10g33310Os.51882.1.S1_at11/1110+17170254..17173783Cyclin-dependent kinase inhibitor family protein, expressed
LOC_Os10g33310Os.17475.1.S1_at9/1110+17170254..17173783Cyclin-dependent kinase inhibitor family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009439biological_processcyanate metabolism
GO:0008824molecular_functioncyanate hydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2500.1.S1_at--1062--9919Chr11:25788706..25788774 (24 bp)
TACCTAGGTACCAAGGCCTGATACA
NONE
Os.2500.1.S1_at--489--1751Chr10:17143473..17143497 (25 bp)
ACCTAGGTACCAAGGCCTGATACAT
LOC_Os10g33270
Os.2500.1.S1_at--80--4311Chr10:17143474..17143498 (25 bp)
CCTAGGTACCAAGGCCTGATACATA
LOC_Os10g33270
Os.2500.1.S1_at--1147--6951Chr10:17143479..17143503 (25 bp)
GTACCAAGGCCTGATACATAGGTAT
LOC_Os10g33270
Os.2500.1.S1_at--476--9991Chr10:17143480..17143504 (25 bp)
TACCAAGGCCTGATACATAGGTATC
LOC_Os10g33270
Os.2500.1.S1_at--60--1711Chr10:17143481..17143505 (25 bp)
ACCAAGGCCTGATACATAGGTATCA
LOC_Os10g33270
Os.2500.1.S1_at--541--892Chr10:17143485..17143509 (25 bp)
AGGCCTGATACATAGGTATCAGCTC
LOC_Os10g33270
Os.2500.1.S1_at--135--4271Chr10:17143488..17143512 (25 bp)
CCTGATACATAGGTATCAGCTCGAT
LOC_Os10g33270
Os.2500.1.S1_at--923--9951NONE
TACCCAGGGTACCAGATTGAATGAA
NONE
Os.2500.1.S1_at--720--1711NONE
ACCCAGGGTACCAGATTGAATGAAG
NONE
Os.2500.1.S1_at--450--4171NONE
CCCAGGGTACCAGATTGAATGAAGC
NONE
Target Sequence 
TACCTAGGTACCAAGGCCTGATACATAGGTATCAGCTCGATACCCAGGGTACCAGATTGAATGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis