Browse Element(s) Details


Os.25016.1.A1_at

Description gb:AK067112.1
DB_XREF= gi:32977130
TID=Os.25016.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25016 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013095A01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013095A01, full insert sequence.
FL= gb:AK067112.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0520011/11MBOAT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05150OsAffx.4255.1.S1_at10/115+2484469..2487332DNA replication protein, putative, expressed
LOC_Os05g05160Os.26547.1.S1_at11/115+2489655..2496038Extracellular signal-regulated kinase 1, putative, expressed
LOC_Os05g05170Os.55311.1.S1_at10/115+2498823..2499640Jacalin-like lectin domain containing protein, expressed
LOC_Os05g05180Os.54708.1.S1_at11/115+2500945..2503210GH3 auxin-responsive promoter family protein, expressed
LOC_Os05g05190OsAffx.14553.1.S1_at11/115+2505032..2505475hypothetical protein
LOC_Os05g05200Os.25016.1.A1_at11/115+2506995..2514271MBOAT family protein, expressed
LOC_Os05g05210Os.14992.1.S1_x_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05210OsAffx.26740.1.S1_at11/115+2514596..2518749LEC14B protein, putative, expressed
LOC_Os05g05220Os.10499.1.S1_at11/115+2519360..2523990expressed protein
LOC_Os05g05230Os.52584.1.S1_at11/115+2526678..2537189homeotic gene regulator, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0008415molecular_functionacyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25016.1.A1_at--707--3211Chr05:2507976..2508391 (25 bp)
CAAGTTCCAGCCAAGAAGTGCCCTT
LOC_Os05g05200
Os.25016.1.A1_at--77--2871Chr05:2507928..2507952 (25 bp)
AAGTGCAATTGCTGGTGCTGTGACA
LOC_Os05g05200
Os.25016.1.A1_at--454--7311Chr05:2507914..2507938 (25 bp)
GTGCTGTGACAATAAGCTGCCTTAT
LOC_Os05g05200
Os.25016.1.A1_at--513--3671Chr05:2507631..2507918 (25 bp)
CTTATGGTGGCAAACCTTGTCGGTT
LOC_Os05g05200
Os.25016.1.A1_at--137--7191Chr05:2507613..2507637 (25 bp)
GTCGGTTATGTTGTAGGACCCTCCG
LOC_Os05g05200
Os.25016.1.A1_at--842--5811Chr05:2507597..2507621 (25 bp)
GACCCTCCGGCATTAAACTTCTCAT
LOC_Os05g05200
Os.25016.1.A1_at--490--2511Chr05:2507582..2507606 (25 bp)
AACTTCTCATGTCACGAATGCTTGG
LOC_Os05g05200
Os.25016.1.A1_at--328--7491Chr05:2507341..2507447 (25 bp)
GTGGGAGTTAAGCTTATGTTTCATA
LOC_Os05g05200
Os.25016.1.A1_at--714--1511Chr05:2507240..2507264 (25 bp)
AGCAGCTGCGATGAGACGCTGTCAA
LOC_Os05g05200
Os.25016.1.A1_at--74--10091Chr05:2507202..2507226 (25 bp)
TAGGCTTACCTCTTCTTTTATGGGA
LOC_Os05g05200
Os.25016.1.A1_at--835--9651Chr05:2506999..2507023 (25 bp)
TCAGACAATTTTCCTATGAGCTCTT
LOC_Os05g05200
Target Sequence 
CAAGTTCCAGCCAAGAAGTGCCCTTGGGTTGTTCNTTCNCCGGGAGTTAAGTGCAATTGCTGGTGCTGTGACAATAAGCT
GCCTTATGGTGGCAAACCTTGTCGGTTATGTTGTAGGACCCTCCGGCATTAAACTTCTCATGTCACGAATGCTTGGGAAG
GATGCCCTTCCTGTCCNTGCCTTCATATTTATCTCNTTCTATGTGGGAGTTAAGCTTATGTTTCATATACGTGACGCNCA
TNAGAATCAAGGGTGATAACTGATAAGTCNACGGGGAAGAACTCCCNCTGTAAAATGTAGACAAGCAGCTGCGATGAGAC
GCTGTCAAGACTCAAGACAAATAGGCTTACCTCTTCTTTTATGGGATTTGTTTGACNCGAACNAAAAGCTCCTCTGACCG
CCGAGCTTTGGCTNTTNTGTAANGTAGGGCTTATTGATTGGGGTAGTGAAGATAATAGAGCNCAAATGGAAATGGTACTN
CGAGCTCTGTTTTTAAGAGTGGAAATGCAGGGCNCNCTCCNTTGGATTGAAGGAATTTCAATTCTCAGACAATTTTCCTA
TGAGCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25016.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis