Browse Element(s) Details


Os.25025.1.S1_at

Description gb:AK063371.1
DB_XREF= gi:32973389
TID=Os.25025.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25025 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-114-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-114-E05, full insert sequence.
FL= gb:AK063371.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0482011/11Leucine carboxyl methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04770Os.35344.18.S1_x_at11/116+2076565..2082612transposon protein, putative, Mutator sub-class
LOC_Os06g04770Os.35344.3.S1_x_at9/116+2076565..2082612transposon protein, putative, Mutator sub-class
LOC_Os06g04770OsAffx.22940.5.S1_x_at3/116+2076565..2082612transposon protein, putative, Mutator sub-class
LOC_Os06g04780Os.26713.1.S1_at11/116+2083593..2086278expressed protein
LOC_Os06g04790Os.11192.1.S1_at10/116+2087542..2089992Acid phosphatase 1 precursor, putative, expressed
LOC_Os06g04800Os.54403.1.S1_at11/116+2090290..2093673Proteasome subunit beta type 6 precursor, putative, expressed
LOC_Os06g04810OsAffx.27458.1.S1_at11/116+2094929..2097814Leucine Rich Repeat family protein
LOC_Os06g04820Os.25025.1.S1_at11/116+2099282..2104395Leucine carboxyl methyltransferase family protein, expressed
LOC_Os06g04820Os.22618.1.S1_at2/116+2099282..2104395Leucine carboxyl methyltransferase family protein, expressed
LOC_Os06g04830OsAffx.15265.1.S1_at11/116+2106122..2109064Leucine Rich Repeat family protein, expressed
LOC_Os06g04840Os.53844.1.S1_at11/116+2111540..2115562Leucine Rich Repeat family protein, expressed
LOC_Os06g04850Os.37618.1.S1_at11/116+2122411..2123782Homeobox-leucine zipper protein HAT3, putative, expressed
LOC_Os06g04850Os.49759.1.S1_x_at1/116+2122411..2123782Homeobox-leucine zipper protein HAT3, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008168molecular_functionmethyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25025.1.S1_at--745--431Chr06:2100248..2100272 (25 bp)
ATCTTTTTCTTGATCACGGATGGCA
LOC_Os06g04820
Os.25025.1.S1_at--476--2471Chr06:2099798..2099822 (25 bp)
AACACTATTGTGTGGCTTATGGAAT
LOC_Os06g04820
Os.25025.1.S1_at--144--4011Chr06:2099605..2099629 (25 bp)
CGTGCTCTTTTTGATATCGAACTGA
LOC_Os06g04820
Os.25025.1.S1_at--543--5211Chr06:2099565..2099589 (25 bp)
GAATTCCTACTGTTTCCTATGCAGA
LOC_Os06g04820
Os.25025.1.S1_at--930--9871Chr06:2099456..2099480 (25 bp)
TACTTGGTTGTATCGATTGTCATGT
LOC_Os06g04820
Os.25025.1.S1_at--696--731Chr06:2099423..2099447 (25 bp)
ATGTTGCTTTTCTGCCTTAGCTGAA
LOC_Os06g04820
Os.25025.1.S1_at--1059--4731Chr06:2099404..2099428 (25 bp)
GCTGAATGGTTTTTCTGACGTTTCC
LOC_Os06g04820
Os.25025.1.S1_at--231--6931Chr06:2099370..2099394 (25 bp)
GTATGGGCTCGTCATGCAATTGTAT
LOC_Os06g04820
Os.25025.1.S1_at--726--2831Chr06:2099336..2099360 (25 bp)
AAGTATTGTCTTACCGTTCAGGCGT
LOC_Os06g04820
Os.25025.1.S1_at--12--1791Chr06:2099324..2099348 (25 bp)
ACCGTTCAGGCGTTTTATCTGTCTT
LOC_Os06g04820
Os.25025.1.S1_at--1023--7871Chr06:2099298..2099322 (25 bp)
GGTTTTATCTCTGCTTGTTCAATAA
LOC_Os06g04820
Target Sequence 
ATCTTTTTCTTGATCACGGATGGCAGAGAGCTGTTGCATGGGNATATGCTAAAAATATACAATGATTTCATTGACAGTGA
AGAAAGACGCAGGATTGAACGATTGGAATTGTTTGATGAGTTCGAAGAGTGGCATATGATGCAGGAACACTATTGTGTGG
CTTATGGAATAAATGATGCCAAGGGCCTGTTTGATGATTTTGGGTTTAANNNGGACTAGCACTCGTCGTGCTCTTTTTGA
TATCGAACTGAGACAAATTCAACTGGGAATTCCTACTGTTTCCTATGCAGAGAAACGTACTTGAAGTGTGTGAAATGTTT
GGCAGAATNTGAGAGATGATGGCTATAACAACATTGTACATATTCTGTTTGCAGATACTTGGTTGTATCGATTGTCATGT
TGTTATGTATGTTGCTTTTCTGCCTTAGCTGAATGGTTTTTCTGACGTTTCCAAACCCTTNGTATGGGCTCGTCATGCAA
TTGTATGGTCTGGAGAAGTATTGTCTTACCGTTCAGGCGTTTTATCTGTCTTTGGTTTTATCTCTGCTTGTTCAATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25025.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis