Browse Element(s) Details


Os.2507.1.S1_at

Description gb:CR290980
DB_XREF= gi:44677546
DB_XREF=CR290980
CLONE=y608c12p3
TID=Os.2507.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.2507 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3769011/11Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37640Os.46890.1.S1_x_at11/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.1.S1_s_at11/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.2.S1_x_at10/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37640Os.46890.2.S1_at10/1110+19811001..19815183HIT zinc finger family protein, expressed
LOC_Os10g37650OsAffx.18559.1.S1_x_at9/1110+19818393..19821502impaired sucrose induction 1, putative
LOC_Os10g37650OsAffx.18559.1.S1_at7/1110+19818393..19821502impaired sucrose induction 1, putative
LOC_Os10g37660Os.38110.1.S1_at11/1110+19824881..19829516Trehalase family protein, expressed
LOC_Os10g37670Os.46559.1.S1_at11/1110+19831327..19832769Actin-depolymerizing factor, putative, expressed
LOC_Os10g37680OsAffx.3017.1.S1_x_at2/1110+19834024..19836024hypothetical protein
LOC_Os10g37680OsAffx.31754.1.S1_x_at1/1110+19834024..19836024hypothetical protein
LOC_Os10g37690Os.2507.1.S1_at11/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37690Os.46640.1.S1_at5/1110+19836527..19841423Inner membrane protein OXA1-like, mitochondrial precursor, putative, expressed
LOC_Os10g37700NANA10+19843860..19844269hypothetical protein
LOC_Os10g37710Os.16221.1.S1_at11/1110+19845969..19849489hydrolase, alpha/beta fold family protein, expressed
LOC_Os10g37720OsAffx.6895.1.S1_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37720Os.5387.1.S1_x_at11/1110+19852007..19856441hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os10g37730Os.38131.1.S1_at11/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.38131.2.S1_a_at10/1110+19855575..19859948pollen ankyrin, putative, expressed
LOC_Os10g37730Os.46639.1.A1_x_at10/1110+19855575..19859948pollen ankyrin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006461biological_processprotein complex assembly
GO:0045039biological_processprotein import into mitochondrial inner membrane
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0016020cellular_componentmembrane
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2507.1.S1_at--590--8391Chr10:19840917..19840941 (25 bp)
GGCGCAGGTAAATTGTCGGCACACA
LOC_Os10g37690
Os.2507.1.S1_at--262--5871Chr10:19840943..19840967 (25 bp)
GAGCCTAGATGAGCAAACTGTCATT
LOC_Os10g37690
Os.2507.1.S1_at--892--4711Chr10:19841033..19841057 (25 bp)
GCTGGCATTGCTTTTTTGGTGGAAT
LOC_Os10g37690
Os.2507.1.S1_at--326--10391Chr10:19841137..19841161 (25 bp)
TTGTTGTTCGTTTCCAAGGATTTAG
LOC_Os10g37690
Os.2507.1.S1_at--446--6791Chr10:19841185..19841209 (25 bp)
GTTTTAGTAACGCTCATTGGCACCA
LOC_Os10g37690
Os.2507.1.S1_at--942--8231Chr10:19841203..19841227 (25 bp)
GGCACCAGAGACCAAATGTTGTAGT
LOC_Os10g37690
Os.2507.1.S1_at--451--731Chr10:19841218..19841242 (25 bp)
ATGTTGTAGTTCAGTGACACCAGTG
LOC_Os10g37690
Os.2507.1.S1_at--139--5651Chr10:19841233..19841257 (25 bp)
GACACCAGTGGTTCGGACCATCAAG
LOC_Os10g37690
Os.2507.1.S1_at--865--6551Chr10:19841304..19841328 (25 bp)
GATTAGATCTTTTGTATCTGCACAT
LOC_Os10g37690
Os.2507.1.S1_at--1022--5111Chr10:19841323..19841347 (25 bp)
GCACATATGTGGAGGTCCTATTCAT
LOC_Os10g37690
Os.2507.1.S1_at--195--2491Chr10:19841397..19841421 (25 bp)
AACAGATCGTGAAATGAACCGGTTC
LOC_Os10g37690
Target Sequence 
GGCGCAGGTAAATTGTCGGCACACANGAGCCTAGATGAGCAAACTGTCATTNGGCGTTGTGGTCAGTGGAGATTTGACAT
TTGTGGTGGTAAGATTTGATTTTGCATGAGATAAAGGCTGGCATTGCTTTTTTGGTGGAATAAGCCAGTTTAATTTTGAT
AGACANNATAGCTTATACACAAATGTAACTTGAGTTATTAAGTAACTTTACAAAGATCAACNTTGTTGTTCGTTTCCAAG
GATTTAGGTGAGAATAGCTTGTTTCTTGGAGTTTTAGTAACGCTCATTGGCACCAGAGACCAAATGTTGTAGTTCAGTGA
CACCAGTGGTTCGGACCATCAAGGGGTAGGAATGCTTGTTTCTTTTTCATGACTAGATATTTTTTTTATGATTAGATCTT
TTGTATCTGCACATATGTGGAGGTCCTATTCATGATTGTNTAGAGGGCTTGTGCNGCAGTTGTGCGCCTGAATAAAAAGG
TGAACAGATCGTGAAATGAACCGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2507.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis