Browse Element(s) Details


Os.25102.1.S1_at

Description gb:AK064481.1
DB_XREF= gi:32974499
TID=Os.25102.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.25102 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-A10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-A10, full insert sequence.
FL= gb:AK064481.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g589103/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g58840Os.7234.1.S1_at11/113+33446068..33449304Vesicle-associated membrane protein 724, putative, expressed
LOC_Os03g58850OsAffx.13543.1.S1_s_at11/113+33451860..33452657expressed protein
LOC_Os03g58850Os.52854.1.S1_at1/113+33451860..33452657expressed protein
LOC_Os03g58860Os.57314.1.S1_at3/113+33456300..33456617expressed protein
LOC_Os03g58870Os.57314.1.S1_at2/113+33457088..33457621hypothetical protein
LOC_Os03g58880NANA3+33459101..33460675prolyl 4-hydroxylase, putative, expressed
LOC_Os03g58890Os.50961.1.S1_at10/113+33461507..33463461oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed
LOC_Os03g58900OsAffx.13544.1.S1_at11/113+33464318..33467611galactosyltransferase family protein, putative, expressed
LOC_Os03g58910Os.51706.1.S1_at10/113+33469363..33483508expressed protein
LOC_Os03g58910Os.25102.1.S1_at3/113+33469363..33483508expressed protein
LOC_Os03g58920Os.23190.1.A1_at11/113+33485397..33489986galactosyltransferase family protein, putative, expressed
LOC_Os03g58930NANA3+33492522..33495095expressed protein
LOC_Os03g58940OsAffx.3640.1.S1_at9/113+33502713..33505138Protease inhibitor/seed storage/LTP family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25102.1.S1_at--721--9971Chr03:33469531..33469555 (25 bp)
TACCATTGCTCGTGTTGTTCTGAAG
LOC_Os03g58910
Os.25102.1.S1_at--423--2271Chr03:33469437..33469461 (25 bp)
AAATCAGTGTATCTTGCCCTCATAA
LOC_Os03g58910
Os.25102.1.S1_at--179--4551Chr03:33469422..33469446 (25 bp)
GCCCTCATAATACCACAGCAATATC
LOC_Os03g58910
Os.25102.1.S1_at--473--9191Chr03:33469283..33469307 (25 bp)
TGCCACTGCACCTTTACTTCAATAG
NONE
Os.25102.1.S1_at--849--4871Chr03:33469242..33469266 (25 bp)
GCTATATCAGTTTTGTTTGGCTCCA
NONE
Os.25102.1.S1_at--1096--7671Chr03:33469203..33469227 (25 bp)
GGGTTTTCCATAGTAAGCTCATTCT
NONE
Os.25102.1.S1_at--7--4831Chr03:33469187..33469211 (25 bp)
GCTCATTCTATGCTTTCTGGATATA
NONE
Os.25102.1.S1_at--797--10171Chr03:33469166..33469190 (25 bp)
TATACTACTTGTCGCGATGGTTCTC
NONE
Os.25102.1.S1_at--672--5671Chr03:33469128..33469152 (25 bp)
GACATCACCTCGTCTAACTTGTAAT
NONE
Os.25102.1.S1_at--840--2031Chr03:33469090..33469114 (25 bp)
ACTATTCATCCAACTTTGTGGCCTC
NONE
Os.25102.1.S1_at--904--10551Chr03:33469049..33469073 (25 bp)
TTCTTGATACATGAACGTGCCTGAT
NONE
Target Sequence 
TACCATTGCTCGTGTTGTTCTGAAGGATTCAAAGAAAGCAAATGACAAATCAAATGTTCTCATTTTGAAGAATCCATACA
AACTTNGCCTGAACAAATCAGTGTATCTTGCCCTCATAATACCACAGCAATATCAAACAAAACGCCGTTACTTTGAAGGT
AACTCGGATTTGCAAAGTGAGGTAAACCATTGAGATCTGCAACTTTGGCTAAGCCTTTACTCAATAGGAAGGGAGGTTGN
GGGGATTTTGCCACTGCACCTTTACTTCAATAGGTACAATCTGACATACGCTATATCAGTTTTGTTTGGCTCCATATTTA
CCAACATAGGGTTTTCCATAGTAAGCTCATTCTATGCTTTCTGGATATACTACTTGTCGCGATGGTTCTCGGCCATGTCA
TAGGACATCACCTCGTCTAACTTGTAATTTTAGCTGTTGTAACTATTCATCCAACTTTGTGGCCTCNGTTTTCAGTTCGA
GGTTCTTGATACATGAACGTGCCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis