Browse Element(s) Details


Os.25185.1.S1_at

Description gb:AK073221.1
DB_XREF= gi:32983244
TID=Os.25185.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25185 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033005A04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033005A04, full insert sequence.
FL= gb:AK073221.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4324011/11Jacalin-like lectin domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g43220Os.46785.2.S1_x_at5/115+25050447..25054444retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g43220OsAffx.30226.2.S1_x_at1/115+25050447..25054444retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g43220OsAffx.442.1.S1_x_at1/115+25050447..25054444retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g43230OsAffx.15081.1.S1_at10/115+25070837..25074449papain-like cysteine peptidase XBCP3, putative, expressed
LOC_Os05g43240Os.25185.1.S1_at11/115+25075780..25080241Jacalin-like lectin domain containing protein, expressed
LOC_Os05g43252Os.420.1.S2_at11/115+25081106..25086087expressed protein
LOC_Os05g43252Os.420.1.S1_at11/115+25081106..25086087expressed protein
LOC_Os05g43264NANA5+25092528..25093185NA
LOC_Os05g43280Os.7504.2.S1_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S2_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280OsAffx.15082.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43280Os.7504.1.S1_x_at11/115+25093445..25103502MATH domain containing protein, expressed
LOC_Os05g43290OsAffx.15083.1.S1_at11/115+25103589..25104529hypothetical protein
LOC_Os05g43300Os.15545.1.S1_at11/115+25105050..25109889H1flk, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006457biological_processprotein folding
GO:0005829cellular_componentcytosol
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25185.1.S1_at--655--4531Chr05:25079728..25079752 (25 bp)
GCCCAGGGTTCTGAGGTCGATCACC
LOC_Os05g43240
Os.25185.1.S1_at--947--9651Chr05:25079748..25079772 (25 bp)
TCACCTTCATCAGCAACCGAGGGAA
LOC_Os05g43240
Os.25185.1.S1_at--895--5871Chr05:25079854..25079878 (25 bp)
GAGCGGGCAACACCTGGACGCCATT
LOC_Os05g43240
Os.25185.1.S1_at--81--9111Chr05:25079917..25079941 (25 bp)
TGCTCCCAAGTACGTGCTATCAAAG
LOC_Os05g43240
Os.25185.1.S1_at--1097--2831Chr05:25079939..25079963 (25 bp)
AAGTACCTCTTCTGATTGAGCTATG
LOC_Os05g43240
Os.25185.1.S1_at--921--6251Chr05:25080044..25080068 (25 bp)
GATGGGCTGGTTTCGATTTGAGCTT
LOC_Os05g43240
Os.25185.1.S1_at--194--2131Chr05:25080097..25080121 (25 bp)
ACAGTTTAAGCCTGCGGATGAGTCC
LOC_Os05g43240
Os.25185.1.S1_at--729--7991Chr05:25080112..25080136 (25 bp)
GGATGAGTCCGTTCCTTGTACTCAG
LOC_Os05g43240
Os.25185.1.S1_at--562--10811Chr05:25080127..25080151 (25 bp)
TTGTACTCAGGCAGGCAGGCATATA
LOC_Os05g43240
Os.25185.1.S1_at--741--171Chr05:25080195..25080219 (25 bp)
ATTTTCTGATTCTTTTGCTTGCCGT
LOC_Os05g43240
Os.25185.1.S1_at--51--4911Chr05:25080211..25080235 (25 bp)
GCTTGCCGTGGAGAATTGGAGACCT
LOC_Os05g43240
Target Sequence 
GCCCAGGGTTCTGAGGTCGATCACCTTCATCAGCAACCGAGGGAAGTACGGGCCATTCGGAGAGGAGTTCGGGGCATACT
TCTCGTCGGCGAAGACGGAAGGGAAGGTTGTGGGCTTCCATGGCCGGAGCGGGCAACACCTGGACGCCATTGGGGTGCAT
ATGCAGCACTGGATGGGAGACAGGAGGCCTGCTCCCAAGTACGTGCTATCAAAGTACCTCTTCTGATTGAGCTATGGATG
AAAACTTGAATTCCTTTGAAACAAAAAGTGAATACTTGAATTACATGTAGTTTAGCCAATAGTCATATAGATAACAGATG
GGCTGGTTTCGATTTGAGCTTTGGAGGCTGTAACATTTTGGGATATGGAACAGTTTAAGCCTGCGGATGAGTCCGTTCCT
TGTACTCAGGCAGGCAGGCATATACTTAATGCATGACGATTTATGAGTAAATTCAAATGAAATTCACATTTTCTGATTCT
TTTGCTTGCCGTGGAGAATTGGAGACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25185.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis