Browse Element(s) Details


Os.25204.1.S1_at

Description gb:AK069068.1
DB_XREF= gi:32979092
TID=Os.25204.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023007H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023007H24, full insert sequence.
FL= gb:AK069068.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2041011/11Guanylate-binding protein, N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g20360Os.7989.1.S1_at9/112+11997094..12002615tyrosine/nicotianamine aminotransferases family protein, expressed
LOC_Os02g20370OsAffx.24345.1.S1_at11/112+12004894..12005217hypothetical protein
LOC_Os02g20370OsAffx.24345.1.S1_x_at11/112+12004894..12005217hypothetical protein
LOC_Os02g20370OsAffx.13996.1.S1_x_at1/112+12004894..12005217hypothetical protein
LOC_Os02g20380Os.7532.1.S1_at11/112+12009030..12015471expressed protein
LOC_Os02g20394OsAffx.12131.1.S1_at11/112+12019005..12023440DnaJ domain containing protein, expressed
LOC_Os02g20394Os.53015.1.S1_at10/112+12019005..12023440DnaJ domain containing protein, expressed
LOC_Os02g20410Os.25204.1.S1_at11/112+12023811..12034637Guanylate-binding protein, N-terminal domain containing protein, expressed
LOC_Os02g20410Os.5767.1.S1_at1/112+12023811..12034637Guanylate-binding protein, N-terminal domain containing protein, expressed
LOC_Os02g20420OsAffx.12134.1.S1_at3/112+12039379..12052089retrotransposon protein, putative, LINE subclass
LOC_Os02g20420OsAffx.12133.1.S1_at1/112+12039379..12052089retrotransposon protein, putative, LINE subclass
LOC_Os02g20430Os.46280.1.A1_at6/112+12052019..12057368DNA excision repair protein ERCC-8, putative, expressed
LOC_Os02g20430Os.20081.1.S1_x_at6/112+12052019..12057368DNA excision repair protein ERCC-8, putative, expressed
LOC_Os02g20440Os.27347.3.S1_at4/112+12058720..12061500hypothetical protein
LOC_Os02g20440Os.46440.1.A1_s_at3/112+12058720..12061500hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006955biological_processimmune response
GO:0042306biological_processregulation of protein import into nucleus
GO:0005856cellular_componentcytoskeleton
GO:0003924molecular_functionGTPase activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25204.1.S1_at--22--6511Chr02:12024434..12024458 (25 bp)
GATATGGATATTGATCGTCCGGAGA
LOC_Os02g20410
Os.25204.1.S1_at--220--2351Chr02:12024391..12024415 (25 bp)
AAAGCAATACTAGCCCTCTAAAGCA
LOC_Os02g20410
Os.25204.1.S1_at--341--871Chr02:12024352..12024376 (25 bp)
ATGGCGGTTCTGTTCATATGGGTGA
LOC_Os02g20410
Os.25204.1.S1_at--704--5371Chr02:12024329..12024353 (25 bp)
GAAGACAGTGTCACAGTCAGCACAG
LOC_Os02g20410
Os.25204.1.S1_at--137--7111Chr02:12024314..12024338 (25 bp)
GTCAGCACAGACACTAAAGATGGCA
LOC_Os02g20410
Os.25204.1.S1_at--665--2351Chr02:12024273..12024297 (25 bp)
AAAGCTCACGATTGCAAAGCTGAAA
LOC_Os02g20410
Os.25204.1.S1_at--541--6171Chr02:12024248..12024272 (25 bp)
GAGGAGCTTACCAAGCATGGATTTG
LOC_Os02g20410
Os.25204.1.S1_at--790--4571Chr02:12024221..12024245 (25 bp)
GCGCAGTTGCTAGAGTTAAAGAATC
LOC_Os02g20410
Os.25204.1.S1_at--1046--2731Chr02:12024191..12024215 (25 bp)
AAGAAGGATATACTTGCGCTCTATA
LOC_Os02g20410
Os.25204.1.S1_at--33--651Chr02:12024121..12024145 (25 bp)
ATGCTTGACCTTATGCTTGCTGAGC
LOC_Os02g20410
Os.25204.1.S1_at--182--4931Chr02:12024107..12024131 (25 bp)
GCTTGCTGAGCTGTGTGAAGTATGT
LOC_Os02g20410
Target Sequence 
GATATGGATATTGATCGTCCGGAGAGGAGCAGNAAGAGATCTAAAAGCAATACTAGCCCTCTAAAGCATTNCCAATCTGA
AGATGGCGGTTCTGTTCATATGGGTGAAGACAGTGTCACAGTCAGCACAGACACTAAAGATGGCAATCCAGATGGGTATA
AAAAGCTCACGATTGCAAAGCTGAAAGAGGAGCTTACCAAGCATGGATTTGGAGCGCAGTTGCTAGAGTTAAAGAATCCT
AACAAGAAGGATATACTTGCGCTCTATAAGAAGCTTGTGTTGGGCAAGTAAATTACCCCCGGTATCTGCAGAAATGCTTG
ACCTTATGCTTGCTGAGCTGTGTGAAGTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis