Browse Element(s) Details


Os.25246.1.A1_at

Description gb:AK066503.1
DB_XREF= gi:32976521
TID=Os.25246.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25246 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013074H13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074H13, full insert sequence.
FL= gb:AK066503.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0520011/11DENN domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g05120OsAffx.24971.1.S1_at11/113+2471064..2472076hypothetical protein
LOC_Os03g05130NANA3+2473495..2473893hypothetical protein
LOC_Os03g05140OsAffx.3137.1.S1_x_at11/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05140Os.50672.1.S2_x_at1/113+2474917..2478009Leucine Rich Repeat family protein, expressed
LOC_Os03g05150OsAffx.24973.1.S1_at11/113+2478314..2481211hypothetical protein
LOC_Os03g05160OsAffx.24974.1.S1_x_at11/113+2485241..2486000GATA zinc finger family protein
LOC_Os03g05160OsAffx.24974.1.S1_at11/113+2485241..2486000GATA zinc finger family protein
LOC_Os03g05170OsAffx.24975.1.S1_at11/113+2486752..2487448hypothetical protein
LOC_Os03g05180Os.56558.1.S1_at11/113+2491981..2495345expressed protein
LOC_Os03g05180OsAffx.12737.1.S1_at6/113+2491981..2495345expressed protein
LOC_Os03g05200Os.25246.1.A1_at11/113+2495970..2505071DENN domain containing protein, expressed
LOC_Os03g05210Os.54611.1.S1_at11/113+2507978..2509531zfwd1 protein, putative, expressed
LOC_Os03g05220NANA3+2510154..2512018expressed protein
LOC_Os03g05230Os.23314.1.S1_at4/113+2513273..2514656expressed protein
LOC_Os03g05240NANA3+2517931..2519094retrotransposon protein, putative, unclassified
LOC_Os03g05250OsAffx.24976.1.S1_at10/113+2520158..2522276hypothetical protein
LOC_Os03g05260Os.23316.1.A1_at10/113+2522726..2525428Tankyrase 1, putative, expressed
LOC_Os03g05270OsAffx.12738.1.S1_at11/113+2527728..2531536CHY zinc finger family protein, expressed
LOC_Os03g05270OsAffx.12738.1.S1_x_at11/113+2527728..2531536CHY zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25246.1.A1_at--228--9831Chr03:2496538..2496559 (22 bp)
TAAAGCTTTTTGTGGAGACGCAGAT
LOC_Os03g05200
Os.25246.1.A1_at--244--6291Chr03:2496516..2496540 (25 bp)
GATGTTCTCTGTTCTATCAGATTCT
LOC_Os03g05200
Os.25246.1.A1_at--181--411Chr03:2496501..2496525 (25 bp)
ATCAGATTCTCGACTTTCCACATTT
LOC_Os03g05200
Os.25246.1.A1_at--64--331Chr03:2496462..2496486 (25 bp)
ATAAAACGGTTTGCTCTAGTCAGAG
LOC_Os03g05200
Os.25246.1.A1_at--330--6451Chr03:2496438..2496462 (25 bp)
GATCAAAGTAATCAACTTCCCCGGT
LOC_Os03g05200
Os.25246.1.A1_at--193--7551Chr03:2496411..2496435 (25 bp)
GTGGCGAAAATTTCCCTGTCATTAG
LOC_Os03g05200
Os.25246.1.A1_at--352--4271Chr03:2496397..2496421 (25 bp)
CCTGTCATTAGAACGATCGGGCAAT
LOC_Os03g05200
Os.25246.1.A1_at--347--1411Chr03:2496368..2496392 (25 bp)
AGAAAAGGCAGTCCGGACCGAGAAT
LOC_Os03g05200
Os.25246.1.A1_at--838--2291Chr03:2496232..2496256 (25 bp)
AAATGGGATGCACCTGTCCTTTGGG
LOC_Os03g05200
Os.25246.1.A1_at--724--6491Chr03:2496077..2496101 (25 bp)
GATAGCTTATTCATTGCAGTGCGCA
LOC_Os03g05200
Os.25246.1.A1_at--525--9051Chr03:2496063..2496087 (25 bp)
TGCAGTGCGCATATACCCGGAGTTC
LOC_Os03g05200
Target Sequence 
TAAAGCTTTTTGTGGAGACGCAGATGTTCTCTGTTCTATCAGATTCTCGACTTTCCACATTTGAGAATGAACTAACATAA
AACGGTTTGCTCTAGTCAGAGATCAAAGTAATCAACTTCCCCGGTTTGTGGCGAAAATTTCCCTGTCATTAGAACGATCG
GGCAATGGGAAGAAAAGGCAGTCCGGACCGAGAATTGAGGGTTAGACNGCGCAAGCCCCAGNAGTTTCCGTTCAATGCTG
GAGCTTAAAAGACGGATGAATNGGATAGTCTGGACATGAAAAATGTGTGATGCAACCCAGTNTTTTAAATGGGATGCACC
TGTCCTTTGGGTTTGGGAAGGTATACATGGGATGGAAAAGAAATGTTTCAATGCTGCATTACAGTTATATATATTTTTGG
TTCCTAGTATTCTNTTCGTTATACAAATCAGCGTATATAGTGAAAAGAATCCTGTAAATAAGATAGCTTATTCATTGCAG
TGCGCATATACCCGGAGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25246.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis