Browse Element(s) Details


Os.25475.1.S1_at

Description gb:AK110851.1
DB_XREF= gi:32996060
TID=Os.25475.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25475 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-172-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-172-C06, full insert sequence.
FL= gb:AK110851.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4378011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43730OsAffx.7882.1.S1_x_at1/1112+27128865..27132954expressed protein
LOC_Os12g43740NANA12+27135120..27136028oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os12g43750Os.55110.1.S1_at11/1112+27139430..27140307expressed protein
LOC_Os12g43760Os.38172.1.S1_x_at6/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43760Os.43567.1.S1_x_at2/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43760Os.53217.1.S1_x_at2/1112+27151012..27153132transposon protein, putative, unclassified
LOC_Os12g43770OsAffx.32181.1.S1_at11/1112+27154482..27155870F-box domain containing protein
LOC_Os12g43780Os.25475.1.S1_at11/1112+27157385..27158406expressed protein
LOC_Os12g43790NANA12+27163743..27164249bZIP transcription factor family protein, expressed
LOC_Os12g43810Os.52999.1.S1_at11/1112+27171897..27172508expressed protein
LOC_Os12g43820OsAffx.20109.1.S1_at11/1112+27175674..27176105expressed protein
LOC_Os12g43830Os.23586.1.S1_at11/1112+27176739..27179569expressed protein
LOC_Os12g43840Os.54809.1.S1_at11/1112+27179922..27185459TPR Domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25475.1.S1_at--566--9111Chr12:27157938..27157962 (25 bp)
TGCTGCTTCGCCATTTCAAGAATTC
LOC_Os12g43780
Os.25475.1.S1_at--857--3151Chr12:27157913..27157937 (25 bp)
AATTCTGACTCTGTTTTCTCCATAC
LOC_Os12g43780
Os.25475.1.S1_at--425--10531Chr12:27157791..27157815 (25 bp)
TTCACCTTCTACGAGGCCGGCAAGA
LOC_Os12g43780
Os.25475.1.S1_at--158--1311Chr12:27157703..27157727 (25 bp)
AGATGATCATCTCCTCCTGGGAGAG
LOC_Os12g43780
Os.25475.1.S1_at--103--1011Chr12:27157680..27157704 (25 bp)
AGGATCTCCGGCGACATCTCGAGGA
LOC_Os12g43780
Os.25475.1.S1_at--798--9671Chr12:27157631..27157655 (25 bp)
TCACCGGCTCACTGCAGCAATGGAG
LOC_Os12g43780
Os.25475.1.S1_at--174--291Chr12:27157566..27157590 (25 bp)
ATAGAGGCCATGATCTTCGAGGAGA
LOC_Os12g43780
Os.25475.1.S1_at--118--911Chr12:27157532..27157556 (25 bp)
AGGCTGTGCGTGACATGATGCTTGT
LOC_Os12g43780
Os.25475.1.S1_at--961--6331Chr12:27157516..27157540 (25 bp)
GATGCTTGTTGCCTGAATCTTTGAC
LOC_Os12g43780
Os.25475.1.S1_at--574--5251Chr12:27157502..27157526 (25 bp)
GAATCTTTGACACCTCCTGAATGTA
LOC_Os12g43780
Os.25475.1.S1_at--858--10671Chr12:27157471..27157495 (25 bp)
TTCCAATTGGGCACAACATCTTGTT
LOC_Os12g43780
Target Sequence 
TGCTGCTTCGCCATTTCAAGAATTCAATTCTGACTCTGTTTTCTCCATACAGGTGAGAAGGACGACGAGTCGCCGTCGAC
TTCAGGGAAGAGCTCGCCGCCGCCGCCACCGGAGCAGAATCCGCTCGACGCCGCCGCCGCTCCATGCTTCACCTTCTACG
AGGCCGGCAAGAATTGCAAAGCGGAGACAGGAGACGAAGAAGAGTACGAGACGACGAGGTCCAAGCTGGAGGAGCAGATG
ATCATCTCCTCCTGGGAGAGGATCTCCGGCGACATCTCGAGGATCCCCGCGCTGGTGGAGCTCGACCTCACCGGCTCACT
GCAGCAATGGAGGCGGCTCAGGGAGGAGGAAGCATCGCAGGTAGGGGCAAGCATAGAGGCCATGATCTTCGAGGAGATGA
GAGTGGAGGCTGTGCGTGACATGATGCTTGTTGCCTGAATCTTTGACACCTCCTGAATGTAAATAAATTCCAATTGGGCA
CAACATCTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25475.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis