Browse Element(s) Details


Os.25613.1.A1_s_at

Description gb:AK120401.1
DB_XREF= gi:37990024
TID=Os.25613.1
CNT=15
FEA=FLmRNA
TIER=FL+Stack
STK=8
UG=Os.25613 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088G22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088G22, full insert sequence.
FL= gb:AK120401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0547011/11CCT motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g05430Os.11895.1.S1_at11/112+2611618..2614085expressed protein
LOC_Os02g05430Os.11895.1.S2_at11/112+2611618..2614085expressed protein
LOC_Os02g05430OsAffx.2512.1.S1_x_at1/112+2611618..2614085expressed protein
LOC_Os02g05440Os.19983.1.S1_x_at11/112+2614245..2618991expressed protein
LOC_Os02g05440Os.19983.2.S1_at11/112+2614245..2618991expressed protein
LOC_Os02g05450Os.7330.1.S2_at11/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05450Os.7330.1.S1_at10/112+2620367..2626307PHD-finger family protein, expressed
LOC_Os02g05460OsAffx.2515.1.S1_at11/112+2631738..2632109expressed protein
LOC_Os02g05470Os.57511.1.A1_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_s_at11/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470Os.25613.1.A1_at6/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05470OsAffx.24575.1.S1_x_at1/112+2638432..2642084CCT motif family protein, expressed
LOC_Os02g05480Os.12683.1.S1_at11/112+2642979..2646358Mitogen-activated protein kinase homolog NTF3, putative, expressed
LOC_Os02g05490Os.26369.1.S1_at11/112+2656063..2659126expressed protein
LOC_Os02g05500Os.7288.1.S1_at11/112+2659670..2663041Pyridoxamine 5'-phosphate oxidase family protein, expressed
LOC_Os02g05510Os.6390.1.S1_at11/112+2664440..2668159GATA transcription factor 25, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045036biological_processprotein targeting to chloroplast
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25613.1.A1_s_at--1049--5071Chr02:2641493..2641517 (25 bp)
GCACCCGACTGTTCTCGAAGAAGAT
LOC_Os02g05470
Os.25613.1.A1_s_at--1106--3771Chr02:2641506..2641530 (25 bp)
CTCGAAGAAGATCCGGTACCAGGTC
LOC_Os02g05470
Os.25613.1.A1_s_at--356--5311Chr02:2641533..2641557 (25 bp)
GAAGGTGAACGCAGACTGCCGGCCT
LOC_Os02g05470
Os.25613.1.A1_s_at--511--9171Chr02:2641549..2641573 (25 bp)
TGCCGGCCTCGGATGAAGGCAAGCA
LOC_Os02g05470
Os.25613.1.A1_s_at--804--5311Chr02:2641755..2641779 (25 bp)
GAAGGTTTGTTAGGAGCCCATCTCT
LOC_Os02g05470
Os.25613.1.A1_s_at--559--3551Chr02:2641773..2641797 (25 bp)
CATCTCTTCTTCAACAAGTCCTGGA
LOC_Os02g05470
Os.25613.1.A1_s_at--1013--5651Chr02:2641822..2641846 (25 bp)
GACAGTGATACTTGCTAGCCTTTTT
LOC_Os02g05470
Os.25613.1.A1_s_at--569--9971Chr02:2641837..2641861 (25 bp)
TAGCCTTTTTTATGAGCACCCTTTT
LOC_Os02g05470
Os.25613.1.A1_s_at--186--10231Chr02:2641860..2641884 (25 bp)
TTTGGCCTTTTAGTTCCTCATTAGC
LOC_Os02g05470
Os.25613.1.A1_s_at--1008--7951Chr02:2641980..2642004 (25 bp)
GGATCACATAGTTTGTCTCAGGTTT
LOC_Os02g05470
Os.25613.1.A1_s_at--969--8711Chr02:2641993..2642017 (25 bp)
TGTCTCAGGTTTACAATGTGCGGTA
LOC_Os02g05470
Target Sequence 
GCACCCGACTGTTCTCGAAGAAGATCCGGTACCAGGTCCGGAAGGTGAACGCAGACTGCCGGCCTCGGATGAAGGCAAGC
ACTAGAACTGATTCTTGAGAGCATAAAAAAAGGGAAGGTTTGTTAGGAGCCCATCTCTTCTTCAACAAGTCCTGGAGGAA
GAGAGCTAGACAGAGTGACAGACAGTGATACTTGCTAGCCTTTTTTATGAGCACCCTTTTTGGCCTTTTAGTTCCTCATT
AGCTAAGAGATGTGATGAGTGAGGTTTTATTTTTTGGCTTTGTTTGGAGTTTTGCTTTGGAGGAAGATAGAGAAGCCTTT
AGAATGAGTTGTGATGGAGGATCACATAGTTTGTCTCAGGTTTACAATGTGCGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25613.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis