Browse Element(s) Details


Os.25619.1.S1_at

Description gb:CA758867
DB_XREF= gi:25802906
DB_XREF=BR030042000_PLATE_H12_96_103.ab1
CLONE=BR030042000_PLATE_H12_96_103.ab1
TID=Os.25619.1
CNT=17
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.25619 (NCBI UniGene Cluster)
UG_TITLE=Cytosolic fructose-1,6-bisphosphatase mRNA, partial cds
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3627010/11Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g36200NANA5+21383025..21386261retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g36210OsAffx.16109.1.S1_at11/115+21390828..21391733hypothetical protein
LOC_Os05g36220OsAffx.24383.1.S1_at3/115+21391977..21394211transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36230OsAffx.24188.1.S1_x_at1/115+21396048..21398667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36230OsAffx.24188.1.S1_at1/115+21396048..21398667transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g36240OsAffx.28294.3.S1_x_at11/115+21398937..21401641hypothetical protein
LOC_Os05g36240OsAffx.28294.2.S1_at8/115+21398937..21401641hypothetical protein
LOC_Os05g36240OsAffx.28294.2.S1_x_at8/115+21398937..21401641hypothetical protein
LOC_Os05g36240Os.10038.1.S1_s_at1/115+21398937..21401641hypothetical protein
LOC_Os05g36250OsAffx.14983.1.S1_at11/115+21405209..21405721hypothetical protein
LOC_Os05g36260Os.50985.1.S1_at11/115+21408757..21410423Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os05g36270Os.25619.1.S1_at10/115+21410700..21413652Fructose-1,6-bisphosphatase, cytosolic, putative, expressed
LOC_Os05g36280Os.10246.2.S1_at11/115+21416261..21416993Histone H3, putative, expressed
LOC_Os05g36290Os.11355.1.S1_at11/115+21417384..21421062Actin-1, putative, expressed
LOC_Os05g36300OsAffx.27197.1.S1_at5/115+21425089..21425355expressed protein
LOC_Os05g36310Os.55524.1.S1_at10/115+21426203..21427428Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g36320OsAffx.5118.1.S1_x_at3/115+21428656..21429066hypothetical protein
LOC_Os05g36330OsAffx.5136.1.S1_at4/115+21429425..21429628hypothetical protein
LOC_Os05g36340Os.52777.1.S1_s_at11/115+21431220..21432061expressed protein
LOC_Os05g36350OsAffx.4540.1.S1_at11/115+21434936..21436624pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0005986biological_processsucrose biosynthesis
GO:0006000biological_processfructose metabolism
GO:0016051biological_processcarbohydrate biosynthesis
GO:0019252biological_processstarch biosynthesis
GO:0019253biological_processreductive pentose-phosphate cycle
GO:0042132molecular_functionfructose-bisphosphatase activity
GO:0042578molecular_functionphosphoric ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25619.1.S1_at--970--10831NONE
TTGGGATGCTCCTACAGCGAAGTTT
NONE
Os.25619.1.S1_at--677--8571Chr05:21411777..21411801 (25 bp)
TGGTTCGCCTTCTAAATCCTTGAGA
LOC_Os05g36270
Os.25619.1.S1_at--860--6971Chr05:21411492..21411516 (25 bp)
GTACCCTGCGGATCAGAAGAGCCCA
LOC_Os05g36270
Os.25619.1.S1_at--1007--3971Chr05:21411376..21411399 (24 bp)
CGTGTTCTGTACGAAGTGTTCCCAA
LOC_Os05g36270
Os.25619.1.S1_at--330--5331Chr05:21411364..21411388 (25 bp)
GAAGTGTTCCCAATGTCATTCTTGA
LOC_Os05g36270
Os.25619.1.S1_at--566--6191Chr05:21411327..21411351 (25 bp)
GAGGACAAGCTTTCACAGGCAAACA
LOC_Os05g36270
Os.25619.1.S1_at--1128--4531Chr05:21411026..21411050 (25 bp)
GCCCTTGAACTTGTTCCCAGAAAGA
LOC_Os05g36270
Os.25619.1.S1_at--349--1551Chr05:21410946..21410970 (25 bp)
AGCATTGTACGCTTCAGAGTCTATC
LOC_Os05g36270
Os.25619.1.S1_at--284--391Chr05:21410880..21410904 (25 bp)
ATCACCCTCTACCTTGTGAACATAG
LOC_Os05g36270
Os.25619.1.S1_at--884--5611Chr05:21410814..21410838 (25 bp)
GACACGGTACGGCTTCACCAATATG
LOC_Os05g36270
Os.25619.1.S1_at--591--5491Chr05:21410751..21410775 (25 bp)
GAACATAAGTGCCTTTTCAGCTCCT
LOC_Os05g36270
Target Sequence 
TTGGGATGCTCCTACAGCGAAGTTTGTGGAGAAATGTAAATTTCCCCAGGATGGTTCGCCTTCTAAATCCTTGAGATACA
TCGGAAGTATGGTTGCTGATGTCCACCGTACTTTGCTATATGGAGGCATATTTTTGTACCCTGCGGATCAGAAGAGCCCA
AACGGAAAACTTCGTGTTCTGTACGAAGTGTTCCCAATGTCATTCTTGATGGAGCAAGCTGGAGGACAAGCTTTCACAGG
CAAACAACGGGCCCTTGAACTTGTTCCCAGAAAGATTCATGATAGATCTCCAATATTCCTGGGGAGCTATGATGACGTGG
AGGATATCAAAGCATTGTACGCTTCAGAGTCTATCATCGGTTGACCGGTGTTNCTGAAGAGTAAAAGGACACATGAATCA
CCCTCTACCTTGTGAACATAGACATTTTTTTTNGCTTTAATGTAAAAAAATCAGCCTATACTGACACGGTACGGCTTCAC
CAATATGAAAGAATNAAGGAATATGATTCTTACATAATTTGATTGGAACATAAGTGCCTTTTCAGCTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis