Browse Element(s) Details


Os.25651.1.S1_at

Description gb:AK058900.1
DB_XREF= gi:32968918
TID=Os.25651.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25651 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative glutathione S-transferase (P0493G01.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-008-A07, full insert sequence.
FL= gb:AK058900.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2736011/11glutathione S-transferase GSTF1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g27340Os.40662.1.S1_at11/111+15585714..15587153glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27350NANA1+15603150..156036022-hydroxyisoflavanone dehydratase, putative
LOC_Os01g27360Os.25651.1.S1_at11/111+15608036..15609939glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27360Os.47136.1.A1_x_at3/111+15608036..15609939glutathione S-transferase GSTF1, putative, expressed
LOC_Os01g27370OsAffx.23415.1.S1_at11/111+15610938..15612683hypothetical protein
LOC_Os01g27380OsAffx.23416.1.S1_s_at11/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27380OsAffx.23416.1.S1_at9/111+15616080..15618181glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27390Os.36663.1.S1_at11/111+15618535..15621275glutathione S-transferase GSTF2, putative, expressed
LOC_Os01g27400OsAffx.11226.1.S1_at11/111+15623829..15625998hypothetical protein
LOC_Os01g27410NANA1+15626643..15626939hypothetical protein
LOC_Os01g27420OsAffx.19542.3.S1_x_at7/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g27420OsAffx.21754.1.S1_x_at1/111+15629132..15635468retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0009407biological_processtoxin catabolism
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005739cellular_componentmitochondrion
GO:0004364molecular_functionglutathione transferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25651.1.S1_at--370--5831Chr01:15608611..15608635 (25 bp)
GACCTACTCCGGGAAGGCAACTTGA
LOC_Os01g27360
Os.25651.1.S1_at--290--5631Chr01:15608549..15608573 (25 bp)
GACACACCAGTACAACTCGGCGATT
LOC_Os01g27360
Os.25651.1.S1_at--845--8371Chr01:15608531..15608555 (25 bp)
GGCGATTTCACCGATTGTGTACGAG
LOC_Os01g27360
Os.25651.1.S1_at--165--4671Chr01:15608486..15608510 (25 bp)
GCGTGGGATCCCAACTAACCAAAAG
LOC_Os01g27360
Os.25651.1.S1_at--1137--7431Chr01:15608419..15608443 (25 bp)
GTGTACGAGGCACGACTGTCACAGA
LOC_Os01g27360
Os.25651.1.S1_at--1094--1351Chr01:15608397..15608421 (25 bp)
AGAGCACGTACCTCGCAGGTGACTT
LOC_Os01g27360
Os.25651.1.S1_at--611--8451Chr01:15608168..15608192 (25 bp)
TGGCCAATCGGATAGTTCTCTTCTT
LOC_Os01g27360
Os.25651.1.S1_at--640--151Chr01:15608139..15608163 (25 bp)
ATTATCCTGAATCTTGCTGTGGCTT
LOC_Os01g27360
Os.25651.1.S1_at--1105--7531Chr01:15608121..15608145 (25 bp)
GTGGCTTTCTTAATGTTTTCGCGCA
LOC_Os01g27360
Os.25651.1.S1_at--1099--3391Chr01:15608074..15608098 (25 bp)
CAGCAGCCGAATTGCATGACTGTGC
LOC_Os01g27360
Os.25651.1.S1_at--557--3891Chr01:15608055..15608079 (25 bp)
CTGTGCAATTTTCTTGGCGGTTCAG
LOC_Os01g27360
Target Sequence 
GACCTACTCCGGGAAGGCAACTTGAGGGAGGCAGCCATGGTGGATGTCTGGACCGAGGTGGAGACACACCAGTACAACTC
GGCGATTTCACCGATTGTGTACGAGTGCATCATCAACCCAGCCATGCGTGGGATCCCAACTAACCAAAAGGTCGTGGACG
AGAGCGCGGAGAAGCTGAAGAAGGTGCTGGAGGTGTACGAGGCACGACTGTCACAGAGCACGTACCTCGCAGGTGACTTC
GTCAGCTTCGCCGACCTGAACCACTTCCCCTACACCTTCTACTTCATGGGGACACCGTACGCGTCGCTGTTCGACTCGTA
CCCTCATGTGAAGGCATGGTGGGAGAGGCTCATGGCGAGNCCGTCCGTCAAGAAGCTCGCCGCGGTCATGGCTCCTCAGG
GGGCGTAGGCGTGAGGACGACCTGAAATCCTGAATTCGGTGGATGGCCAATCGGATAGTTCTCTTCTTGATGATTATCCT
GAATCTTGCTGTGGCTTTCTTAATGTTTTCGCGCATGTGCAATTTGATTAAATAAGACAGCAGCCGAATTGCATGACTGT
GCAATTTTCTTGGCGGTTCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis