Browse Element(s) Details


Os.25910.1.S1_at

Description gb:AK062819.1
DB_XREF= gi:32972837
TID=Os.25910.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-E12, full insert sequence.
FL= gb:AK062819.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2813011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28080NANA11+15640679..15640945hypothetical protein
LOC_Os11g28104Os.46662.2.S1_s_at11/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104OsAffx.31176.1.S1_x_at10/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104Os.26767.1.A1_at9/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104Os.46662.2.S1_x_at2/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104OsAffx.21209.1.S1_at1/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28130Os.25910.1.S1_s_at11/1111+15661535..15662533expressed protein
LOC_Os11g28130Os.25910.1.S1_at11/1111+15661535..15662533expressed protein
LOC_Os11g28140OsAffx.10637.1.S1_s_at11/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28140OsAffx.10637.3.S1_s_at11/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28140OsAffx.10637.4.S1_s_at8/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.32056.1.S1_at11/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.32056.1.S1_x_at11/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.30536.1.S1_x_at1/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28160OsAffx.31177.1.S1_at10/1111+15686749..15689228hypothetical protein
LOC_Os11g28160OsAffx.17842.1.S1_at1/1111+15686749..15689228hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25910.1.S1_at--159--6411Chr11:15662006..15662030 (25 bp)
GATCTGGCCTATGAGGCGTGGATCC
LOC_Os11g28130
Os.25910.1.S1_at--420--8431Chr11:15662011..15662035 (25 bp)
GGCCTATGAGGCGTGGATCCGACCA
LOC_Os11g28130
Os.25910.1.S1_at--747--691Chr11:15662016..15662040 (25 bp)
ATGAGGCGTGGATCCGACCACCGCG
LOC_Os11g28130
Os.25910.1.S1_at--713--211Chr11:15662476..15662500 (25 bp)
ATTTGTGATGCCTAATGGTCTACGA
LOC_Os11g28130
Os.25910.1.S1_at--190--7391Chr11:15662480..15662504 (25 bp)
GTGATGCCTAATGGTCTACGACTAG
LOC_Os11g28130
Os.25910.1.S1_at--492--6351Chr11:15662482..15662506 (25 bp)
GATGCCTAATGGTCTACGACTAGCT
LOC_Os11g28130
Os.25910.1.S1_at--460--9191Chr11:15662484..15662508 (25 bp)
TGCCTAATGGTCTACGACTAGCTAG
LOC_Os11g28130
Os.25910.1.S1_at--701--2971Chr11:15662489..15662513 (25 bp)
AATGGTCTACGACTAGCTAGGCTTA
LOC_Os11g28130
Os.25910.1.S1_at--703--8571Chr11:15662491..15662515 (25 bp)
TGGTCTACGACTAGCTAGGCTTATA
LOC_Os11g28130
Os.25910.1.S1_at--255--7112Chr11:15662493..15662517 (25 bp)
GTCTACGACTAGCTAGGCTTATAAT
LOC_Os11g28130
Os.25910.1.S1_at--471--4073Chr11:15662498..15662522 (25 bp)
CGACTAGCTAGGCTTATAATATTAT
LOC_Os11g28130
Target Sequence 
GATCTGGCCTATGAGGCGTGGATCCGACCACCGCGGCCACGACCCCAACTGTCGGNCCACTTCCTCCTCCGCCACCACAT
CGCCAACCGCCGGATCCGGCCACCGCAGCCTCTCCCCCGAGTGCCGGCCGCTTCCTCCTCCGCCACTGCACCGCCAACCG
CCGGATCCGGCCTCGACAAGTTTGTGGGGCGCGGATCCGACCACCGCGGCCTCTCCCCCGACCGTCGGCCGCTTCCTCCT
CTGCCACCGTACCACCAACCGCTGGATCCGGGCGAGGATCCGGCCACCGCCTCCTCCACCACTGCACCACCGCCAGATGA
ATATGATTGTTATGATTTTTGTGATTTTGTTTTGTGCCCAAATCATTGTGAATGTGAAGTGATTTTGTTCTTTGGCCAGA
TGAATGTGATTGCGATGATTTTTGTGATTCTGTCTTGTGTCAAAATGACTGTGAATGTGATTATTTTTGTGATTTGTGAT
GCCTAATGGTCTACGACTAGCTAGGCTTATAATATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25910.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis