Browse Element(s) Details


Os.25910.1.S1_s_at

Description gb:AK062819.1
DB_XREF= gi:32972837
TID=Os.25910.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.25910 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-E12, full insert sequence.
FL= gb:AK062819.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2813011/11expressed protein
LOC_Os04g347002/11hypothetical protein
LOC_Os03g043501/11hypothetical protein
LOC_Os10g014901/11hypothetical protein
LOC_Os07g181801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g28080NANA11+15640679..15640945hypothetical protein
LOC_Os11g28104Os.46662.2.S1_s_at11/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104OsAffx.31176.1.S1_x_at10/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104Os.26767.1.A1_at9/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104Os.46662.2.S1_x_at2/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28104OsAffx.21209.1.S1_at1/1111+15643037..15659723Protein kinase domain containing protein, expressed
LOC_Os11g28130Os.25910.1.S1_s_at11/1111+15661535..15662533expressed protein
LOC_Os11g28130Os.25910.1.S1_at11/1111+15661535..15662533expressed protein
LOC_Os11g28140OsAffx.10637.1.S1_s_at11/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28140OsAffx.10637.3.S1_s_at11/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28140OsAffx.10637.4.S1_s_at8/1111+15673104..15676790transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.32056.1.S1_at11/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.32056.1.S1_x_at11/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28150OsAffx.30536.1.S1_x_at1/1111+15678059..15683474transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g28160OsAffx.31177.1.S1_at10/1111+15686749..15689228hypothetical protein
LOC_Os11g28160OsAffx.17842.1.S1_at1/1111+15686749..15689228hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.25910.1.S1_s_at--567--1691Chr11:15662258..15662282 (25 bp)
ACCAACCGCTGGATCCGGGCGAGGA
LOC_Os11g28130
Os.25910.1.S1_s_at--1045--9032Chr11:15662307..15662331 (25 bp)
TGCACCACCGCCAGATGAATATGAT
LOC_Os11g28130
Os.25910.1.S1_s_at--1--3371Chr11:15662312..15662336 (25 bp)
CACCGCCAGATGAATATGATTGTTA
LOC_Os11g28130
Os.25910.1.S1_s_at--655--6511Chr11:15662347..15662371 (25 bp)
GATTTTGTTTTGTGCCCAAATCATT
LOC_Os11g28130
Os.25910.1.S1_s_at--567--7291Chr11:15662358..15662382 (25 bp)
GTGCCCAAATCATTGTGAATGTGAA
LOC_Os11g28130
Os.25910.1.S1_s_at--401--7419Chr11:15662383..15662407 (25 bp)
GTGATTTTGTTCTTTGGCCAGATGA
LOC_Os11g28130
Os.25910.1.S1_s_at--708--8432Chr11:15662398..15662422 (25 bp)
GGCCAGATGAATGTGATTGCGATGA
LOC_Os11g28130
Os.25910.1.S1_s_at--614--772Chr11:15662408..15662432 (25 bp)
ATGTGATTGCGATGATTTTTGTGAT
LOC_Os11g28130
Os.25910.1.S1_s_at--255--734Chr11:15662419..15662443 (25 bp)
ATGATTTTTGTGATTCTGTCTTGTG
LOC_Os11g28130
Os.25910.1.S1_s_at--942--6571Chr11:15662430..15662454 (25 bp)
GATTCTGTCTTGTGTCAAAATGACT
LOC_Os11g28130
Os.25910.1.S1_s_at--469--102111Chr11:15662466..15662490 (25 bp)
TATTTTTGTGATTTGTGATGCCTAA
LOC_Os11g28130
Target Sequence 
ACCAACCGCTGGATCCGGGCGAGGATCCGGCCACCGCCTCCTCCACCACTGCACCACCGCCAGATGAATATGATTGTTAT
GATTTTTGTGATTTTGTTTTGTGCCCAAATCATTGTGAATGTGAAGTGATTTTGTTCTTTGGCCAGATGAATGTGATTGC
GATGATTTTTGTGATTCTGTCTTGTGTCAAAATGACTGTGAATGTGATTATTTTTGTGATTTGTGATGCCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.25910.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis