Browse Element(s) Details


Os.2601.1.S1_at

Description gb:AK072520.1
DB_XREF= gi:32982543
TID=Os.2601.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2601 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative LIM domain protein (OSJNBb0073N24.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023131K23, full insert sequence.
FL= gb:AK072520.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3593011/11LIM domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g35870Os.4609.1.S1_a_at11/1110+18842149..18844448Membrane steroid binding protein 1, putative, expressed
LOC_Os10g35880NANA10+18847579..18853656hypothetical protein
LOC_Os10g35890NANA10+18853990..18858417hypothetical protein
LOC_Os10g35920Os.2599.1.S1_at11/1110+18860513..18864841F-box domain containing protein, expressed
LOC_Os10g35930Os.2601.1.S1_at11/1110+18869138..18871109LIM domain containing protein, expressed
LOC_Os10g35940Os.50632.1.S1_x_at10/1110+18871976..18877176dihydrofolate synthetase/folylpolyglutamate synthetase, putative, expressed
LOC_Os10g35950Os.2606.1.S1_at11/1110+18884021..18886719benzoyl-CoA:benzyl alcohol/phenylethanol benzoyltransferase, putative, expressed
LOC_Os10g35950Os.2606.1.S1_x_at10/1110+18884021..18886719benzoyl-CoA:benzyl alcohol/phenylethanol benzoyltransferase, putative, expressed
LOC_Os10g35960Os.9251.1.S1_at11/1110+18888990..18894414NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed
LOC_Os10g35960Os.9251.2.S1_at11/1110+18888990..18894414NAD-dependent malic enzyme 59 kDa isoform, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2601.1.S1_at--1089--8491Chr10:18869714..18869738 (25 bp)
TGGCAGCTGTTCAAGAAGTCCGGCA
LOC_Os10g35930
Os.2601.1.S1_at--20--8271Chr10:18869693..18869717 (25 bp)
GGCAGCTACGACAACCTGCTGAAGC
LOC_Os10g35930
Os.2601.1.S1_at--710--4191Chr10:18869653..18869677 (25 bp)
CCGAGAACACCGTCGAATCCGAGGT
LOC_Os10g35930
Os.2601.1.S1_at--772--9331Chr10:18869545..18869569 (25 bp)
TCGCGGAAGCTGTTGTAGAGGACCA
LOC_Os10g35930
Os.2601.1.S1_at--306--8911Chr10:18869510..18869534 (25 bp)
TGAGAAGAACCTGCCACAGTGCCAC
LOC_Os10g35930
Os.2601.1.S1_at--637--2111Chr10:18869459..18869483 (25 bp)
ACATGTTCCCATATTACTGCTAATT
LOC_Os10g35930
Os.2601.1.S1_at--537--1411Chr10:18869418..18869442 (25 bp)
AGAAACTTGTCGCTGGTTCTTCTCA
LOC_Os10g35930
Os.2601.1.S1_at--1135--6571Chr10:18869381..18869405 (25 bp)
GATTCCTGCAATCCTGGAGTCTGTA
LOC_Os10g35930
Os.2601.1.S1_at--378--4271Chr10:18869369..18869393 (25 bp)
CCTGGAGTCTGTACCTGTGCTAAGA
LOC_Os10g35930
Os.2601.1.S1_at--381--8951Chr10:18869285..18869309 (25 bp)
TGACATGTATCATCCGTCTCAGAAA
LOC_Os10g35930
Os.2601.1.S1_at--96--3091Chr10:18869260..18869284 (25 bp)
AATCAACTTCTCACTGCGAACATTG
LOC_Os10g35930
Target Sequence 
TGGCAGCTGTTCAAGAAGTCCGGCAGCTACGACAACCTGCTGAAGCCCGCCTCCGCCGCCGCCGAGAACACCGTCGAATC
CGAGGTCGCCGTCGCGGAGCCCGCGAAGGAAGACCCGGAGACGGAGGAGGCAGCCAAGGAAGAAGAAGAAGAAGCGTCAC
CGGAGCAGGTCGCGGAAGCTGTTGTAGAGGACCAGGAGCACTCATGAGAAGAACCTGCCACAGTGCCACTTGCACGCGCA
CACAGGAATATATATACATGTTCCCATATTACTGCTAATTTTTTTTGGTGTCGTTGAGAAACTTGTCGCTGGTTCTTCTC
ATCTTCTCGTCTGGATTCCTGCAATCCTGGAGTCTGTACCTGTGCTAAGATATCATGAATGAGAGCAGATTTTGCAAAGA
AAGGGAGAAATATGCTCATTCTGATATTTTGACATGTATCATCCGTCTCAGAAAAATCAACTTCTCACTGCGAACATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2601.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis