Browse Element(s) Details

Os.26343.1.S1_at

Description

gb:AK120250.1
DB_XREF= gi:37989873
TID=Os.26343.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-041-H12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013045F22, full insert sequence.
FL= gb:AK120250.1 gb:AK061908.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g21390	11/11	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g21350	OsAffx.27750.1.S1_x_at	4/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.36607.2.S1_x_at	3/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.55356.1.S1_x_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.55356.1.S1_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21350	Os.46853.2.S1_x_at	1/11	6	+	12327693..12330509	hypothetical protein
LOC_Os06g21360	NA	NA	6	+	12332263..12336284	Sodium/hydrogen exchanger family protein
LOC_Os06g21369	Os.4620.1.S1_at	11/11	6	+	12337888..12340181	hypothetical protein
LOC_Os06g21380	Os.11946.1.S1_at	11/11	6	+	12344921..12349134	carboxyl-terminal protease family protein, expressed
LOC_Os06g21390	Os.26343.1.S1_at	11/11	6	+	12351357..12357104	Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os06g21400	Os.5384.1.S1_at	9/11	6	+	12358337..12359021	hypothetical protein
LOC_Os06g21410	OsAffx.27752.1.S1_s_at	11/11	6	+	12365595..12367161	expressed protein
LOC_Os06g21420	Os.40855.2.S1_x_at	10/11	6	+	12374748..12377078	hypothetical protein
LOC_Os06g21420	Os.40855.4.S1_x_at	4/11	6	+	12374748..12377078	hypothetical protein
LOC_Os06g21420	Os.40855.4.S1_at	1/11	6	+	12374748..12377078	hypothetical protein
LOC_Os06g21420	Os.40360.1.S1_x_at	1/11	6	+	12374748..12377078	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
GO:0003676	molecular_function	nucleic acid binding
GO:0008270	molecular_function	zinc ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.26343.1.S1_at--149--721	1	Chr06:12356566..12356590 (25 bp)	GTCGCAAATACGCTCAATAGTCCAA	LOC_Os06g21390
Os.26343.1.S1_at--976--241	1	Chr06:12356611..12356635 (25 bp)	AAAAACTTTGCCATATCCACTCATC	LOC_Os06g21390
Os.26343.1.S1_at--543--117	1	Chr06:12356660..12356684 (25 bp)	AGTAAACATTCACTGGCCATCGTGC	LOC_Os06g21390
Os.26343.1.S1_at--417--35	1	Chr06:12356699..12356723 (25 bp)	ATAATACTATTCCTTCCTCAATGCT	LOC_Os06g21390
Os.26343.1.S1_at--776--953	1	Chr06:12356725..12356749 (25 bp)	TCTACTGAGGGAAGGCTGCCTGCAC	LOC_Os06g21390
Os.26343.1.S1_at--133--89	1	Chr06:12356758..12356782 (25 bp)	AGGCCACCTGATGCCGTGTGATTGT	LOC_Os06g21390
Os.26343.1.S1_at--649--655	1	Chr06:12356834..12356858 (25 bp)	GATTACTCTTCAGACTACACATTGA	LOC_Os06g21390
Os.26343.1.S1_at--786--525	1	Chr06:12356860..12356884 (25 bp)	GAATCCGCATTAGGACGAGGTCCAG	LOC_Os06g21390
Os.26343.1.S1_at--935--405	1	Chr06:12356875..12356899 (25 bp)	CGAGGTCCAGATGCTTAAAGCCGTT	LOC_Os06g21390
Os.26343.1.S1_at--997--983	1	Chr06:12356890..12356914 (25 bp)	TAAAGCCGTTTGGTTGTCTTGGTCT	LOC_Os06g21390
Os.26343.1.S1_at--511--101	1	Chr06:12357041..12357065 (25 bp)	AGGTTGGCGCTTTTGCTCAGGAAAC	LOC_Os06g21390

Target Sequence

GTCGCAAATACGCTCAATAGTCCAAACGTTAGAACTAAACTGTTGAAAAACTTTGCCATATCCACTCATCTTGCCTCCTG
GCCAGCAGTGATTCAGTAAACATTCACTGGCCATCGTGCCAAAGCACAGGTGTATAATACTATTCCTTCCTCAATGCTCT
CTACTGAGGGAAGGCTGCCTGCACCCAACCACAGGCCACCTGATGCCGTGTGATTGTACTTGTATGAAAAGAAGGAACTA
GAAAAAAAGAAAGANAGGATGAAACAAAGATTACTCTTCAGACTACACATTGATGAATCCGCATTAGGACGAGGTCCAGA
TGCTTAAAGCCGTTTGGTTGTCTTGGTCTGAGGGAGAGAAGGAAAACAAGAAAGGAAACAAATCACATTCTTTATAAACA
TCAGTGTTGAATGTGGCATGNGCTAATGTGCTATATATATNTGATGTTGATATGCCCNGTACATGTTCCTGGAACAGGTT
GGCGCTTTTGCTCAGGAAAC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis