Browse Element(s) Details


Os.26409.1.S1_a_at

Description gb:AK070934.1
DB_XREF= gi:32980957
TID=Os.26409.1
CNT=35
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.26409 (NCBI UniGene Cluster)
UG_TITLE=O.sativa mRNA for chilling-inducible protein
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064K13, full insert sequence.
FL= gb:AY224436.1 gb:AK070934.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0429011/11TAP42-like family protein, expressed
LOC_Os11g0452011/11TAP42-like family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g04240Os.10842.1.S1_at11/1112+1793279..1796384EF hand family protein, expressed
LOC_Os12g04240Os.10842.1.S1_x_at11/1112+1793279..1796384EF hand family protein, expressed
LOC_Os12g04250NANA12+1798483..1799978retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g04260Os.26862.1.S1_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.3.S1_a_at11/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.26862.1.S1_s_at8/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04260Os.10427.1.S1_a_at2/1112+1801715..1806043saccharopine dehydrogenase family protein, expressed
LOC_Os12g04270Os.5332.1.S1_at10/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04270Os.24981.1.A1_at1/1112+1806669..1810157Cytochrome C biogenesis protein transmembrane region containing protein, expressed
LOC_Os12g04280OsAffx.19484.1.S1_at11/1112+1812870..1814809hypothetical protein
LOC_Os12g04290Os.26409.1.S1_a_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.2.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04290Os.26409.3.S1_s_at11/1112+1816628..1820688TAP42-like family protein, expressed
LOC_Os12g04300OsAffx.31574.1.S1_at9/1112+1821392..1822197Sulfotransferase domain containing protein
LOC_Os12g04310OsAffx.19542.3.S1_x_at10/1112+1823634..1827469retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g04320OsAffx.31574.2.S1_at11/1112+1829961..1830974Sulfotransferase domain containing protein
LOC_Os12g04330OsAffx.7481.1.S1_at11/1112+1833700..1834413hypothetical protein
LOC_Os12g04340OsAffx.19485.2.S1_at11/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04340OsAffx.19485.1.S1_s_at11/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04340OsAffx.3105.1.S1_at1/1112+1836950..1837789Sulfotransferase domain containing protein
LOC_Os12g04350OsAffx.30816.1.S1_s_at11/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350OsAffx.30816.1.S1_at10/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350OsAffx.30816.2.S1_at4/1112+1841433..1842707Sulfotransferase domain containing protein, expressed
LOC_Os12g04350Os.53709.1.S1_at1/1112+1841433..1842707Sulfotransferase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009409biological_processresponse to cold
GO:0008601molecular_functionprotein phosphatase type 2A regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26409.1.S1_a_at--60--1312Chr12:1819395..1819419 (25 bp)
AGATGTCATTGAAGGTAGAGCAAGT
LOC_Os12g04290
Os.26409.1.S1_a_at--952--1492Chr12:1819428..1819452 (25 bp)
AGCACATGAGCACAAACACCAGCCG
LOC_Os12g04290
Os.26409.1.S1_a_at--532--2112Chr12:1819431..1819455 (25 bp)
ACATGAGCACAAACACCAGCCGCTG
LOC_Os12g04290
Os.26409.1.S1_a_at--1129--2392Chr12:1819441..1819465 (25 bp)
AAACACCAGCCGCTGATATTTGGCC
LOC_Os12g04290
Os.26409.1.S1_a_at--151--3392Chr12:1819447..1819471 (25 bp)
CAGCCGCTGATATTTGGCCCTGCAA
LOC_Os12g04290
Os.26409.1.S1_a_at--600--1672Chr12:1819448..1819472 (25 bp)
AGCCGCTGATATTTGGCCCTGCAAG
LOC_Os12g04290
Os.26409.1.S1_a_at--821--4212Chr12:1819450..1819474 (25 bp)
CCGCTGATATTTGGCCCTGCAAGTC
LOC_Os12g04290
Os.26409.1.S1_a_at--402--8832Chr12:1819454..1819478 (25 bp)
TGATATTTGGCCCTGCAAGTCTTGT
LOC_Os12g04290
Os.26409.1.S1_a_at--592--232Chr12:1819456..1819480 (25 bp)
ATATTTGGCCCTGCAAGTCTTGTTG
LOC_Os12g04290
Os.26409.1.S1_a_at--64--10212Chr12:1819457..1819481 (25 bp)
TATTTGGCCCTGCAAGTCTTGTTGG
LOC_Os12g04290
Os.26409.1.S1_a_at--1130--8452Chr12:1819461..1819485 (25 bp)
TGGCCCTGCAAGTCTTGTTGGTGGA
LOC_Os12g04290
Target Sequence 
AGATGTCATTGAAGGTAGAGCAAGTGTTTCACAAGCACATGAGCACAAACACCAGCCGCTGATATTTGGCCCTGCAAGTC
TTGTTGGTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26409.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis