Browse Element(s) Details


Os.26511.1.S1_at

Description gb:AK073181.1
DB_XREF= gi:32983204
TID=Os.26511.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26511 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033001M05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033001M05, full insert sequence.
FL= gb:AK073181.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4937011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49320Os.24691.1.A1_s_at11/114+29218811..29222824tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49320Os.27955.2.S1_at1/114+29218811..29222824tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49329NANA4+29227531..29228170NA
LOC_Os04g49340OsAffx.26538.1.S1_at10/114+29229721..29233325tRNA-splicing endonuclease positive effector, putative, expressed
LOC_Os04g49350Os.15142.1.S1_at11/114+29236771..29239032pentatricopeptide, putative, expressed
LOC_Os04g49360NANA4+29239530..29240504F-box domain containing protein, expressed
LOC_Os04g49370Os.26511.1.S1_at11/114+29246807..29247934expressed protein
LOC_Os04g49380OsAffx.25217.1.S1_x_at9/114+29249458..29256274transposon protein, putative, unclassified
LOC_Os04g49380OsAffx.25217.2.S1_x_at5/114+29249458..29256274transposon protein, putative, unclassified
LOC_Os04g49394Os.33624.3.S1_x_at11/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49394OsAffx.14342.1.S1_at11/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49394OsAffx.25216.1.S1_x_at7/114+29257003..29261969Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os04g49410Os.2369.1.S1_a_at11/114+29266053..29269509Alpha-expansin 13 precursor, putative, expressed
LOC_Os04g49420NANA4+29269861..29270469Histone H4, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26511.1.S1_at--224--3391Chr04:29247219..29247243 (25 bp)
CAGCGCCGCGTCCTTCAAGAAGGTG
LOC_Os04g49370
Os.26511.1.S1_at--911--3211Chr04:29247192..29247216 (25 bp)
CAAGGGAGGACAGCTGTCCGTGCTC
LOC_Os04g49370
Os.26511.1.S1_at--165--3991Chr04:29247102..29247126 (25 bp)
CGGGCAAGCTCTGTTATTTGCTTAG
LOC_Os04g49370
Os.26511.1.S1_at--718--191Chr04:29247087..29247111 (25 bp)
ATTTGCTTAGGAGATTTGCCCGCGA
LOC_Os04g49370
Os.26511.1.S1_at--715--1251Chr04:29247076..29247100 (25 bp)
AGATTTGCCCGCGAGGTTCGTGTAC
LOC_Os04g49370
Os.26511.1.S1_at--846--6711Chr04:29247061..29247085 (25 bp)
GTTCGTGTACGCACTCATGTCAAGC
LOC_Os04g49370
Os.26511.1.S1_at--879--1031Chr04:29247002..29247026 (25 bp)
AGGTGACACGGTTGTAATTACAGTT
LOC_Os04g49370
Os.26511.1.S1_at--939--8651Chr04:29246950..29246974 (25 bp)
TGTGAAATGGACGATGTTCCTTTGC
LOC_Os04g49370
Os.26511.1.S1_at--586--9251Chr04:29246933..29246957 (25 bp)
TCCTTTGCCCCATGGGCTATGTAAA
LOC_Os04g49370
Os.26511.1.S1_at--238--771Chr04:29246874..29246898 (25 bp)
ATGTCTCGAATAGTGGCCGCAGCTG
LOC_Os04g49370
Os.26511.1.S1_at--1155--4511Chr04:29246859..29246883 (25 bp)
GCCGCAGCTGCTAAATATCGTGTGA
LOC_Os04g49370
Target Sequence 
CAGCGCCGCGTCCTTCAAGAAGGTGTCCAAGGGAGGACAGCTGTCCGTGCTCGGCGCGAGCAGGAGGACGCGTTCGCCGG
CGACGGCGGCGATCTCGCCGAGGCCGGAAGGGATGCCCGGGCAAGCTCTGTTATTTGCTTAGGAGATTTGCCCGCGAGGT
TCGTGTACGCACTCATGTCAAGCATCATCATCATAAGCACTAAGCAGTACTAGTAGTAGGTGACACGGTTGTAATTACAG
TTTTGAAGTGAAAATGACCAANGAAATGTTGTGAAATGGACGATGTTCCTTTGCCCCATGGGCTATGTAAATATTTCAAG
ACTTTTAGAGAGATTTGGGGTGAAAATGTCTCGAATAGTGGCCGCAGCTGCTAAATATCGTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26511.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis